SNP Profiles of CATONGO-01   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
12._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
13._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
14._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCCC
15._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
16._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
17._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
18._GC-08-277-8-49
AAAA__AAGGGG__GGGG__GGAAGGAA
19._GC-08-109-3-8
AAAA__AAGGGG__GGGG__GGAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCCCTAATTGGTTAACCGG
1._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
2._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
3._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
4._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
5._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
6._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
7._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
8._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
9._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
10._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
11._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
12._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
13._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
14._GC-08-278-8-50
AACCAAGGCCCCTTAATT__TTAACCGG
15._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
16._GC-08-277-8-49
AACCAA__CCCCTTAATTGGTTAACCGG
17._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
18._GC-08-277-8-49
TTCCAACC__CCAGGGAAGGTTAAGGCC
19._GC-08-109-3-8
TTCCAACC__CCAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTTTAACCCCGGTTGGTTGGTTAACC
1._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
2._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
3._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
4._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
5._GC-08-277-8-49
AATTTTAACCCCGGTTGGTTGGTTAACC
6._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
7._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
8._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
9._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
10._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
11._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
12._GC-08-277-8-49
__TTGGAACCCCGGTTGGTTGGTTAACC
13._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
14._GC-08-278-8-50
AATTGGAACCCCGGTTGGTTGGTTAACC
15._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
16._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
17._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
18._GC-08-277-8-49
AAAAAAAACCCCGGAA__AAGGAAAAGG
19._GC-08-109-3-8
AAAACCAACCCCGGAA__AAGGAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGG__TTCCTT
7._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
10._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
11._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
16._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._GC-08-277-8-49
GGTTCCAAGGAACCCC__GGTTTTCCTT
18._GC-08-277-8-49
CC__GG__GGAAGG__GGGGAAAAGGAA
19._GC-08-109-3-8
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTTTAAGGGGACAATTGGGGTT
1._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
2._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
3._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
4._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
5._GC-08-277-8-49
TTAACCTTTTAAGGGGACAATTGGGGTT
6._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
7._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
8._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
9._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
10._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
11._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
12._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
13._GC-08-277-8-49
TT__CCTTCCAAGGGGAAAATTGGGGTT
14._GC-08-278-8-50
TTAACCTTCCAAGGGGAAAATTGGGGTT
15._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
16._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
17._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
18._GC-08-277-8-49
AAAAGGAAAAAAGGGGACAAAACCGG__
19._GC-08-109-3-8
AAAAGGAAGGAAGGGGAAAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTAAAACCAAAACCGGCCTTAATT
1._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
2._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
3._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
4._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
5._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
6._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
7._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
8._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
9._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
10._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
11._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
12._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
13._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
14._GC-08-278-8-50
CCGGTTAAAACCAAAA__GGCCTTAATT
15._GC-08-277-8-49
CCGGTTAAAACCAAAA__GGCCTTAATT
16._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
17._GC-08-277-8-49
CCGG__AAAACCAAAACCGGCCTTAATT
18._GC-08-277-8-49
____AAAAAACCAA__CCCCGGTTAAAA
19._GC-08-109-3-8
____AAAAAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._GC-08-277-8-49
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
8._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
9._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
10._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
11._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
12._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
13._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
14._GC-08-278-8-50
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
15._GC-08-277-8-49
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
16._GC-08-277-8-49
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
17._GC-08-277-8-49
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
18._GC-08-277-8-49
AA__AA____GGAAAATTGGX_XX_XX_XX_X
19._GC-08-109-3-8
AA__GG____GGAAAATTGGX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

1._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

9._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

94.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-109-3-8

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240