SNP Profiles of JA 9 /37 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCC
1._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
2._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
3._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
4._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
5._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
6._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
7._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
13._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
14._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
15._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
16._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
17._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
18._CATONGO_1___
AAAA__AAGGGG__GGGG__GGAAGGGG
19._CATONGO_1___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCCTTAATTGGTTAACCGG
1._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
2._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
3._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
4._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
5._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
6._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
7._CATONGO_1___
AACCAAGGCCCCTTAATT__TTAACCGG
8._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
9._CATONGO_1___
AACCAA__CCCCTTAATTGGTTAACCGG
10._CATONGO_1___
AACCAAGGCCCCTTAATTGGTTAACCGG
11._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
12._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
13._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
14._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
15._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
16._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
17._CATONGO_1___
AACCAAGGCCCCCTAATTGGTTAACCGG
18._CATONGO_1___
TTCCAACC__CCAAGGAAGGTTAAGGCC
19._CATONGO_1___
TTCCAACC__CCAGGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACCCCGGTTGGTTGGTTAACC
1._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
2._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
3._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
4._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
5._CATONGO_1___
__TTGGAACCCCGGTTGGTTGGTTAACC
6._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
7._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
8._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
9._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
10._CATONGO_1___
AATTGGAACCCCGGTTGGTTGGTTAACC
11._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
12._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
13._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
14._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
15._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
16._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
17._CATONGO_1___
AATTTTAACCCCGGTTGGTTGGTTAACC
18._CATONGO_1___
AAAACCAACCCCGGAA__AAGGAAAAGG
19._CATONGO_1___
AAAAAAAACCCCGGAA__AAGGAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
7._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
10._CATONGO_1___
GGTTCCAAGGAACCCC__GGTTTTCCTT
11._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
16._CATONGO_1___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._CATONGO_1___
GGTTCCAAGGAACCCCGGGG__TTCCTT
18._CATONGO_1___
CC__GG__GGAAGG__GGGGAAAAGGAA
19._CATONGO_1___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGAAAATTGGGGTT
1._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
2._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
3._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
4._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
5._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
6._CATONGO_1___
TT__CCTTCCAAGGGGAAAATTGGGGTT
7._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
8._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
9._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
10._CATONGO_1___
TTAACCTTCCAAGGGGAAAATTGGGGTT
11._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
12._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
13._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
14._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
15._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
16._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
17._CATONGO_1___
TTAACCTTTTAAGGGGACAATTGGGGTT
18._CATONGO_1___
AAAAGGAAGGAAGGGGAAAAAACCGG__
19._CATONGO_1___
AAAAGGAAAAAAGGGGACAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTAAAACCAAAACCGGCCTTAATT
1._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
2._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
3._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
4._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
5._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
6._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
7._CATONGO_1___
CCGGTTAAAACCAAAA__GGCCTTAATT
8._CATONGO_1___
CCGGTTAAAACCAAAA__GGCCTTAATT
9._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
10._CATONGO_1___
CCGG__AAAACCAAAACCGGCCTTAATT
11._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
12._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
13._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
14._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
15._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
16._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
17._CATONGO_1___
CCGGTTAAAACCAAAACCGGCCTTAATT
18._CATONGO_1___
____AAAAAACCAA__CCCCGGTTAAAA
19._CATONGO_1___
____AAAAAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
1._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
2._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
3._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
4._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
5._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
6._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
7._CATONGO_1___
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
8._CATONGO_1___
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
9._CATONGO_1___
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
10._CATONGO_1___
TTTTCCAATTCC__TTAAGGX_XX_XX_XX_X
11._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
12._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
13._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
14._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
15._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
16._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
17._CATONGO_1___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
18._CATONGO_1___
AA__GG____GGAAAATTGGX_XX_XX_XX_X
19._CATONGO_1___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

2._CATONGO_1 GC-08-109-3-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._CATONGO_1 GC-08-109-3-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

4._CATONGO_1 GC-08-109-3-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._CATONGO_1 GC-08-278-8-50

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._CATONGO_1 GC-08-278-8-50

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._CATONGO_1 GC-08-109-3-8

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240