SNP Profiles of CATONGO-01   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
12._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
13._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
14._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCCC
15._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
16._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
17._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
18._GC-08-277-8-49
AAAA__AAGGGG__GGGG__GGAAGGAA
19._GC-08-109-3-8
AAAA__AAGGGG__GGGG__GGAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCCCTAATTGGTTAACCGG
1._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
2._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
3._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
4._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
5._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
6._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
7._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
8._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
9._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
10._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
11._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
12._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
13._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
14._GC-08-278-8-50
AACCAAGGCCCCTTAATT__TTAACCGG
15._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
16._GC-08-277-8-49
AACCAA__CCCCTTAATTGGTTAACCGG
17._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
18._GC-08-277-8-49
TTCCAACC__CCAGGGAAGGTTAAGGCC
19._GC-08-109-3-8
TTCCAACC__CCAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTTTAACCCCGGTTGGTTGGTTAACC
1._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
2._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
3._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
4._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
5._GC-08-277-8-49
AATTTTAACCCCGGTTGGTTGGTTAACC
6._GC-08-277-8-49
AATTTTAACCCCGGTTGGTTGGTTAACC
7._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
8._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
9._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
10._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
11._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
12._GC-08-277-8-49
__TTGGAACCCCGGTTGGTTGGTTAACC
13._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
14._GC-08-278-8-50
AATTGGAACCCCGGTTGGTTGGTTAACC
15._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
16._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
17._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
18._GC-08-277-8-49
AAAAAAAACCCCGGAA__AAGGAAAAGG
19._GC-08-109-3-8
AAAACCAACCCCGGAA__AAGGAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTCCTTTT
1._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTCCTTTT
2._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTCCTTTT
3._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTCCTTTT
4._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTCCTTTT
5._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
6._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
7._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
8._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
9._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTCCTTTT
10._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTCCTTTT
11._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTCCTTTT
12._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
13._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
14._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTCCTTTT
15._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
16._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTCCTTTT
17._GC-08-277-8-49
GGTTCCAAGGAACCCC__GGTTCCTTTT
18._GC-08-277-8-49
CC__GG__GGAAGG__GGGGAAGGAAAA
19._GC-08-109-3-8
CC__GG__GGAAGG__GGGGAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCTTTTAAGGGGACAATTGGGGTTCC
1._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
2._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
3._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
4._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
5._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
6._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
7._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
8._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
9._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
10._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
11._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
12._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
13._GC-08-277-8-49
__CCTTCCAAGGGGAAAATTGGGGTTCC
14._GC-08-278-8-50
AACCTTCCAAGGGGAAAATTGGGGTTCC
15._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
16._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
17._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
18._GC-08-277-8-49
AAGGAAAAAAGGGGACAAAACCGG____
19._GC-08-109-3-8
AAGGAAGGAAGGGGAAAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
2._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
3._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
4._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
5._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
6._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
7._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
8._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
9._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
10._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
11._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
12._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
13._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
14._GC-08-278-8-50
GGTTAAAACCAAAA__GGCCTTAATTTT
15._GC-08-277-8-49
GGTTAAAACCAAAA__GGCCTTAATTTT
16._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
17._GC-08-277-8-49
GG__AAAACCAAAACCGGCCTTAATTTT
18._GC-08-277-8-49
__AAAAAACCAA__CCCCGGTTAAAAAA
19._GC-08-109-3-8
__AAAAAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
11._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-08-278-8-50
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
16._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
17._GC-08-277-8-49
TTCCAATTCC__TTAAGGX_XX_XX_XX_XX_X
18._GC-08-277-8-49
__AA____GGAAAATTGGX_XX_XX_XX_XX_X
19._GC-08-109-3-8
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-278-8-50

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

6._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

9._CATONGO_1 GC-08-109-3-08

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._CATONGO_1 GC-08-109-3-08

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-109-3-08

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._CATONGO_1 GC-08-277-8-49

94.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

94.4 %
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-109-3-8

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240