SNP Profiles of LP-335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCTCCCCCCGGTTCCTTAA
1._GC-08-283-8-55
AACCCCGGGGCTCCCCCCGGTTCCTTAA
2._GC-08-283-8-55
AACCCCGGGGCTCCCCCCGGTTCCTTAA
3._GC-08-283-8-55
AACCCCGGGGCTCCCCCCGGTTCCTTAA
4._GC-08-283-8-55
AACCCCGGGGCTCCCCCCGGTTCCTTAA
5._LP_3_/35_[POU]
AACCCC________CCCCGG__CC____
6._LP_3_/35_[POU]
AACCCC________CCCCGG__CC____
7._LP_3_/35_[POU]
AACCCC________CCCCGG__CC____
8._LP_3_/35_[POU]
AACCCC________CCCCGG__CC____
9._LP_3_/35_[POU]
AACCCC________CCCCGG__CC____
10._LP_3_/35_[POU]
AACTCC________TTCTGG__CC____
11._LP_3_/35_[POU]
ATCCCC________CCTTAA__CT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGATAACCGGAA
1._GC-08-283-8-55
CCGGGGCCGGTTAATTGGATAACCGGAA
2._GC-08-283-8-55
CCGGGGCCGGTTAATTGGATAACCGGAA
3._GC-08-283-8-55
CCGGGGCCGGTTAATTGGATAACCGGAA
4._GC-08-283-8-55
CCGGGGCCGGTTAATTGGATAACCGGAA
5._LP_3_/35_[POU]
__GG____GG________ATAA__GGAA
6._LP_3_/35_[POU]
__GG____GG________ATAA__GGAA
7._LP_3_/35_[POU]
__GG____GG________ATAA__GGAA
8._LP_3_/35_[POU]
__GG____GG________ATAA__GGAA
9._LP_3_/35_[POU]
__GG____GG________ATAA__GGAA
10._LP_3_/35_[POU]
__AA____GG________TTAA__GGAA
11._LP_3_/35_[POU]
__GG____GG________AATT__GGAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
1._GC-08-283-8-55
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
2._GC-08-283-8-55
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
3._GC-08-283-8-55
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
4._GC-08-283-8-55
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
5._LP_3_/35_[POU]
______CC__AGTT____GG________
6._LP_3_/35_[POU]
______CC__AGTT____GG________
7._LP_3_/35_[POU]
______CC__AGTT____GG________
8._LP_3_/35_[POU]
______CC__AGTT____GG________
9._LP_3_/35_[POU]
______CC__AGTT____GG________
10._LP_3_/35_[POU]
______CC__AAGT____AA________
11._LP_3_/35_[POU]
______GG__AAGG____GG________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-08-283-8-55
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-08-283-8-55
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-08-283-8-55
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-08-283-8-55
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._LP_3_/35_[POU]
__TT__________________TTCC__
6._LP_3_/35_[POU]
__TT__________________TTCC__
7._LP_3_/35_[POU]
__TT__________________TTCC__
8._LP_3_/35_[POU]
__TT__________________TTCC__
9._LP_3_/35_[POU]
__TT__________________TTCC__
10._LP_3_/35_[POU]
__CC__________________CCTT__
11._LP_3_/35_[POU]
__CC__________________CTCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-08-283-8-55
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-08-283-8-55
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-08-283-8-55
GGCCCCCCAAGGGGAAGGGG__AACCCC
4._GC-08-283-8-55
GGCCCCCCAAGG__AAGGGGGGAACCCC
5._LP_3_/35_[POU]
__CC__CCAAGG__AAGGGGGG______
6._LP_3_/35_[POU]
__CC__CCAAGG__AAGGGGGG______
7._LP_3_/35_[POU]
__CC__CCAAGG__AAGGGGGG______
8._LP_3_/35_[POU]
__CC__CCAAGG__AAGGGGGG______
9._LP_3_/35_[POU]
__CC__CCAAGG__AAGGGG________
10._LP_3_/35_[POU]
__CG__CCACGG__ACAAGTGT______
11._LP_3_/35_[POU]
__CC__TTCCCC__CCAAGTGT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCCAAAACCCCGGAACGCCTTAACCCT
1._GC-08-283-8-55
AGCCAAAACCCCGGAACGCCTTAACCCT
2._GC-08-283-8-55
AGCCAAAACCCCGGAACGCCTTAACCCT
3._GC-08-283-8-55
AGCCAAAACCCCGGAACGCCTTAACCCT
4._GC-08-283-8-55
AGCCAAAACCCCGGAACGCCTTAACCCT
5._LP_3_/35_[POU]
AGCC__________AACG______CCCT
6._LP_3_/35_[POU]
AGCC__________AACG______CCCT
7._LP_3_/35_[POU]
AGCC__________AACG______CCCT
8._LP_3_/35_[POU]
AGCC__________AACG______CCCT
9._LP_3_/35_[POU]
AGCC__________AACG______CCCT
10._LP_3_/35_[POU]
AGTT__________CCGG______TTTT
11._LP_3_/35_[POU]
GGCT__________AACC______TTTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-283-8-55
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-283-8-55
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-283-8-55
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-283-8-55
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._LP_3_/35_[POU]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
6._LP_3_/35_[POU]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
7._LP_3_/35_[POU]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
8._LP_3_/35_[POU]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
9._LP_3_/35_[POU]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
10._LP_3_/35_[POU]
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
11._LP_3_/35_[POU]
CC__AG__CTGGCC____X_XX_XX_XX_XX_X

Input profile: LP_3_/35_[POU] GC-08-283-8-55

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._LP_3_/35_[POU] GC-08-283-8-55

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._LP_3_/35_[POU] GC-08-283-8-55

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._LP_3_/35_[POU] GC-08-283-8-55

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._LP_3_/35_[POU] GC-08-283-8-55

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 5
 Dapeng Zhang, 2016

6._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 4
 Dapeng Zhang, 2016

7._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 2
 Dapeng Zhang, 2016

8._LP_3_/35_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 1
 Dapeng Zhang, 2016

9._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 3
 Dapeng Zhang, 2016

10._LP_3_/35_[POU]

52.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B I 818 T13
 Dapeng Zhang, 2016

11._LP_3_/35_[POU]

44.9 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 969
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240