SNP Profiles of LP 335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCTCCCCCCGGTTCCTTAA
1._LP_3_/35_[POU]___
AACCCCGGGGCTCCCCCCGGTTCCTTAA
2._LP_3_/35_[POU]___
AACCCCGGGGCTCCCCCCGGTTCCTTAA
3._LP_3_/35_[POU]___
AACCCCGGGGCTCCCCCCGGTTCCTTAA
4._LP_3_/35_[POU]___
AACCCCGGGGCTCCCCCCGGTTCCTTAA
5._LP_3_/35_[POU]___
AACCCC________CCCCGG__CC____
6._LP_3_/35_[POU]___
AACCCC________CCCCGG__CC____
7._LP_3_/35_[POU]___
AACCCC________CCCCGG__CC____
8._LP_3_/35_[POU]___
AACCCC________CCCCGG__CC____
9._LP_3_/35_[POU]___
AACCCC________CCCCGG__CC____
10._LP_3_/35_[POU]___
AACTCC________TTCTGG__CC____
11._LP_3_/35_[POU]___
ATCCCC________CCTTAA__CT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGATAACCGGAA
1._LP_3_/35_[POU]___
CCGGGGCCGGTTAATTGGATAACCGGAA
2._LP_3_/35_[POU]___
CCGGGGCCGGTTAATTGGATAACCGGAA
3._LP_3_/35_[POU]___
CCGGGGCCGGTTAATTGGATAACCGGAA
4._LP_3_/35_[POU]___
CCGGGGCCGGTTAATTGGATAACCGGAA
5._LP_3_/35_[POU]___
__GG____GG________ATAA__GGAA
6._LP_3_/35_[POU]___
__GG____GG________ATAA__GGAA
7._LP_3_/35_[POU]___
__GG____GG________ATAA__GGAA
8._LP_3_/35_[POU]___
__GG____GG________ATAA__GGAA
9._LP_3_/35_[POU]___
__GG____GG________ATAA__GGAA
10._LP_3_/35_[POU]___
__AA____GG________TTAA__GGAA
11._LP_3_/35_[POU]___
__GG____GG________AATT__GGAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
1._LP_3_/35_[POU]___
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
2._LP_3_/35_[POU]___
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
3._LP_3_/35_[POU]___
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
4._LP_3_/35_[POU]___
TTTTGGCCCCAGTTGGGTGGCCGGCCGG
5._LP_3_/35_[POU]___
______CC__AGTT____GG________
6._LP_3_/35_[POU]___
______CC__AGTT____GG________
7._LP_3_/35_[POU]___
______CC__AGTT____GG________
8._LP_3_/35_[POU]___
______CC__AGTT____GG________
9._LP_3_/35_[POU]___
______CC__AGTT____GG________
10._LP_3_/35_[POU]___
______CC__AAGT____AA________
11._LP_3_/35_[POU]___
______GG__AAGG____GG________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._LP_3_/35_[POU]___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._LP_3_/35_[POU]___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._LP_3_/35_[POU]___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._LP_3_/35_[POU]___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._LP_3_/35_[POU]___
__TT__________________TTCC__
6._LP_3_/35_[POU]___
__TT__________________TTCC__
7._LP_3_/35_[POU]___
__TT__________________TTCC__
8._LP_3_/35_[POU]___
__TT__________________TTCC__
9._LP_3_/35_[POU]___
__TT__________________TTCC__
10._LP_3_/35_[POU]___
__CC__________________CCTT__
11._LP_3_/35_[POU]___
__CC__________________CTCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGAACCCCAG
1._LP_3_/35_[POU]___
GGCCCCCCAAGGGGAAGGGGAACCCCAG
2._LP_3_/35_[POU]___
GGCCCCCCAAGGGGAAGGGGAACCCCAG
3._LP_3_/35_[POU]___
GGCCCCCCAAGGGGAAGGGGAACCCCAG
4._LP_3_/35_[POU]___
GGCCCCCCAAGG__AAGGGGAACCCCAG
5._LP_3_/35_[POU]___
__CC__CCAAGG__AAGGGG______AG
6._LP_3_/35_[POU]___
__CC__CCAAGG__AAGGGG______AG
7._LP_3_/35_[POU]___
__CC__CCAAGG__AAGGGG______AG
8._LP_3_/35_[POU]___
__CC__CCAAGG__AAGGGG______AG
9._LP_3_/35_[POU]___
__CC__CCAAGG__AAGGGG______AG
10._LP_3_/35_[POU]___
__CG__CCACGG__ACAAGT______AG
11._LP_3_/35_[POU]___
__CC__TTCCCC__CCAAGT______GG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAAAACCCCGGAACGCCTTAACCCTCC
1._LP_3_/35_[POU]___
CCAAAACCCCGGAACGCCTTAACCCTCC
2._LP_3_/35_[POU]___
CCAAAACCCCGGAACGCCTTAACCCTCC
3._LP_3_/35_[POU]___
CCAAAACCCCGGAACGCCTTAACCCTCC
4._LP_3_/35_[POU]___
CCAAAACCCCGGAACGCCTTAACCCTCC
5._LP_3_/35_[POU]___
CC__________AACG______CCCTCC
6._LP_3_/35_[POU]___
CC__________AACG______CCCTCC
7._LP_3_/35_[POU]___
CC__________AACG______CCCTCC
8._LP_3_/35_[POU]___
CC__________AACG______CCCTCC
9._LP_3_/35_[POU]___
CC__________AACG______CCCTCC
10._LP_3_/35_[POU]___
TT__________CCGG______TTTTTT
11._LP_3_/35_[POU]___
CT__________AACC______TTTTCC
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._LP_3_/35_[POU]___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._LP_3_/35_[POU]___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._LP_3_/35_[POU]___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._LP_3_/35_[POU]___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._LP_3_/35_[POU]___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
6._LP_3_/35_[POU]___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
7._LP_3_/35_[POU]___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
8._LP_3_/35_[POU]___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
9._LP_3_/35_[POU]___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
10._LP_3_/35_[POU]___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
11._LP_3_/35_[POU]___
__AG__CTGGCC____X_XX_XX_XX_XX_XX_X

Input profile: LP_3_/35_[POU] GC-08-283-8-55

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._LP_3_/35_[POU] GC-08-283-8-55

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._LP_3_/35_[POU] GC-08-283-8-55

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._LP_3_/35_[POU] GC-08-283-8-55

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._LP_3_/35_[POU] GC-08-283-8-55

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 5
 Dapeng Zhang, 2016

6._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 4
 Dapeng Zhang, 2016

7._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 3
 Dapeng Zhang, 2016

8._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 2
 Dapeng Zhang, 2016

9._LP_3_/35_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8855 1
 Dapeng Zhang, 2016

10._LP_3_/35_[POU]

52.6 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B I 818 T13
 Dapeng Zhang, 2016

11._LP_3_/35_[POU]

44.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 969
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240