SNP Profiles of SIAL 88   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
12._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
13._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
14._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
15._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
17._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
2._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
3._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
4._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
5._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
6._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
7._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
8._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
9._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
10._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
11._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
12._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
13._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
14._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
15._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
16._NA
__CCAAGGCCGGTTAATTGGTTAACCGG
17._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
18._GC-01-052-3-07
AACCAGGGCCCCTTAATTGGTTAACCGG
19._GC-01-52-3-7
TTCCAACC__GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
2._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
3._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
4._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
5._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
6._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
7._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
8._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
9._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
10._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
11._NA
AATTGGAACCCCGGTTGGTTAATTAACC
12._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
13._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
14._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
15._NA
AATTGGAACCCCGGTTGGTTAATTAACC
16._NA
AATTGGAACCCCGGTTGGTTAATTAACC
17._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
18._GC-01-052-3-07
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._GC-01-52-3-7
AAAACCAACCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
9._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGGTTTCCTT
10._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGG__TTCCTT
11._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._NA
GGTTCCAAGGAACC__GGGGTTTTCCTT
16._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTT__TT
18._GC-01-052-3-07
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._GC-01-52-3-7
CC__GG__GGAAGG__GGGGAAAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCTTCCAAGGGGACAATTGGGGTT
1._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
2._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
3._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
4._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
5._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
6._GC-01-052-3-07
TTAACCTTCCAAGGGGACAATTGGGGTT
7._NA
TTAACCTTCCAAGGGGACAATTGGGGTT
8._NA
TTAACCTTCCAAGGGG__AATTGGGGTT
9._GC-01-052-3-07
TTAACCTTCCAAGGGGAC__TTGGGGTT
10._GC-01-052-3-07
TTAACCTTCCAAGGGGACAATTGGGGTT
11._NA
TTAACCTTCCAAGGGGAAAATTGGGGTT
12._GC-01-052-3-07
TTAACCTTCCAAGGGGAAAATTGGGGTT
13._GC-01-052-3-07
TTAACCTTCCAAGGGGAAAATTGGGGTT
14._GC-01-052-3-07
TTAACCTTCCAAGGGGAAAATTGGGGTT
15._NA
TTAACCTTCCAAGGGGAAAATTGGGGTT
16._NA
TTAACCTTCCAAGGGGAAAATTGGGGTT
17._GC-01-052-3-07
TTAACCTTCCAAGGGGAAAATTGGGGTT
18._GC-01-052-3-07
TTGGCCTTCCAAGGGG__AATTGGGGTT
19._GC-01-52-3-7
AAAAGGAAGGAAGGGGAAAAAACCGG__
 7172737475767778798081828384
_Input profile
CCGGTTACAACCAAAACCGGCCTTAATT
1._NA
CCGGTTACAACCAAAACCGGCCTTAATT
2._NA
CCGGTTACAACCAAAACCGGCCTTAATT
3._NA
CCGGTTACAACCAAAACCGGCCTTAATT
4._NA
CCGGTTACAACCAAAACCGGCCTTAATT
5._NA
CCGGTTACAACCAAAACCGGCCTTAATT
6._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
7._NA
CCGGTTACAACCAAAACCGGCCTTAATT
8._NA
CCGGTTACAACCAAAACCGGCCTTAATT
9._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
10._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
11._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
12._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
13._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
14._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
15._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
16._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
17._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
18._GC-01-052-3-07
CCGGTTACAGACCCAGACGGCCATCCTT
19._GC-01-52-3-7
____AACCAACCAA__CCCCGGTTAAAA
 85868788899091929394    
_Input profile
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
1._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
2._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
3._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
4._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
5._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
6._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
7._NA
TTCTTTAACTCC__TTAAGGX_XX_XX_XX_X
8._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
9._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
10._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
11._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
12._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
13._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
14._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
15._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
16._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
17._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
18._GC-01-052-3-07
CTCCCTAGCCCCTTTTATGGX_XX_XX_XX_X
19._GC-01-52-3-7
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: SIAL_88 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._SIAL_88 GC-01-052-3-07

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

11._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SIAL_88 GC-01-052-3-07

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SIAL_88 GC-01-052-3-07

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._SIAL_88 GC-01-052-3-07

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

43.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240