SNP Profiles of SIAL 88   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCT
1._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
2._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
3._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
4._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
6._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
7._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
12._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
13._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
14._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
15._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
17._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
CCAAGGCCGGTTAATTGGTTAACCGGAA
1._NA
CCAAGGCCGGTTAATTGGTTAACCGGAA
2._GC-01-052-3-07
CCAAGGCCGGTTAATTGGTTAACCGGAA
3._GC-01-052-3-07
CCAAGGCCGGTTAATTGGTTAACCGGAA
4._GC-01-052-3-07
CCAAGGCCGGTTAATTGGTTAACCGGAA
5._NA
CCAAGGCCGGTTAATTGGTTAACCGGAA
6._GC-01-052-3-07
CCAAGGCCGGTTAATTGGTTAACCGGAA
7._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
8._GC-01-052-3-07
CCAAGGCCCGCTAATTGGTTAACCGGAA
9._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
10._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
11._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
12._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
13._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
14._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
15._GC-01-052-3-07
CCAAGGCCCGCTAATTGGTTAACCGGAA
16._NA
CCAAGGCCCGCTAATTGGTTAACCGGAA
17._GC-01-052-3-07
CCAAGGCCCGCTAATTGGTTAACCGGAA
18._GC-01-052-3-07
CCAGGGCCCCTTAATTGGTTAACCGGAA
19._GC-01-52-3-7
CCAACC__GGAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._NA
TTGGAACCCCGGTTGGTTAATTAACCGG
2._GC-01-052-3-07
TTGGAACCCCGGTTGGTTAATTAACCGG
3._GC-01-052-3-07
TTGGAACCCCGGTTGGTTAATTAACCGG
4._GC-01-052-3-07
TTGGAACCCCGGTTGGTTAATTAACCGG
5._NA
TTGGAACCCCGGTTGGTTAATTAACCGG
6._GC-01-052-3-07
TTGGAACCCCGGTTGGTTAATTAACCGG
7._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
8._GC-01-052-3-07
TTGGAACGCCGGTTGGTTAGTTAACCGG
9._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
10._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
11._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
12._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
13._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
14._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
15._GC-01-052-3-07
TTGGAACGCCGGTTGGTTAGTTAACCGG
16._NA
TTGGAACGCCGGTTGGTTAGTTAACCGG
17._GC-01-052-3-07
TTGGAACGCCGGTTGGTTAGTTAACCGG
18._GC-01-052-3-07
TTGTGGGGCCAAGGGGTTAACCAGCCGG
19._GC-01-52-3-7
AACCAACCCCGGAACCAAAAAAAAGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._NA
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._GC-01-052-3-07
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._GC-01-052-3-07
TTCCAAGGAACCCCGGGGTTTTCCTTTT
4._GC-01-052-3-07
TTCCAAGGAACCCCGGGGTTTTCCTTTT
5._NA
TTCCAAGGAACC__GGGGTTTTCCTTTT
6._GC-01-052-3-07
TTCCAAGGAACCCCGGGGTTTT__TTTT
7._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
8._GC-01-052-3-07
TTCCAAGGAACCCCGGGG__TTCCTTTT
9._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
10._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
11._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
12._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
13._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
14._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
15._GC-01-052-3-07
TTCCAAGGAACCCCGGGGGTTTCCTTTT
16._NA
TTCCAAGGAACCCCGGGGGTTTCCTTTT
17._GC-01-052-3-07
TTCCAAGGAACCCCGGGGGTTTCCTTTT
18._GC-01-052-3-07
TTTTAAGGAACCCCGGAAGGTTCCCCTT
19._GC-01-52-3-7
__GG__GGAAGG__GGGGAAAAGGAAAA
 5758596061626364656667686970
_Input profile
AACCTTCCAAGGGGAAAATTGGGGTTCC
1._NA
AACCTTCCAAGGGGAAAATTGGGGTTCC
2._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
3._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
4._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
5._NA
AACCTTCCAAGGGGAAAATTGGGGTTCC
6._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
7._NA
AACCTTCCAAGGGG__AATTGGGGTTCC
8._GC-01-052-3-07
AACCTTCCAAGGGGACAATTGGGGTTCC
9._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
10._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
11._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
12._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
13._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
14._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
15._GC-01-052-3-07
AACCTTCCAAGGGGACAATTGGGGTTCC
16._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
17._GC-01-052-3-07
AACCTTCCAAGGGGAC__TTGGGGTTCC
18._GC-01-052-3-07
GGCCTTCCAAGGGG__AATTGGGGTTCC
19._GC-01-52-3-7
AAGGAAGGAAGGGGAAAAAACCGG____
 7172737475767778798081828384
_Input profile
GGTTCCAACCAAAACCGGCCTTAATTTT
1._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
2._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
3._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
4._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
5._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
6._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
7._NA
GGTTACAACCAAAACCGGCCTTAATTTT
8._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
9._NA
GGTTACAACCAAAACCGGCCTTAATTTT
10._NA
GGTTACAACCAAAACCGGCCTTAATTTT
11._NA
GGTTACAACCAAAACCGGCCTTAATTTT
12._NA
GGTTACAACCAAAACCGGCCTTAATTTT
13._NA
GGTTACAACCAAAACCGGCCTTAATTTT
14._NA
GGTTACAACCAAAACCGGCCTTAATTTT
15._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
16._NA
GGTTACAACCAAAACCGGCCTTAATTTT
17._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
18._GC-01-052-3-07
GGTTACAGACCCAGACGGCCATCCTTCT
19._GC-01-52-3-7
__AACCAACCAA__CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
9._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
10._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
16._NA
CTTTAACTCC__TTAAGGX_XX_XX_XX_XX_X
17._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-01-052-3-07
CCCTAGCCCCTTTTATGGX_XX_XX_XX_XX_X
19._GC-01-52-3-7
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_88 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._SIAL_88 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._SIAL_88 GC-01-052-3-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

7._SIAL_88 NA

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SIAL_88 GC-01-052-3-07

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._SIAL_88 NA

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240