SNP Profiles of SIAL 88   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCT
1._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
2._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
3._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
4._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
6._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
7._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
12._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
13._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
14._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
15._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
17._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
5._NA
__CCAAGGCCGGTTAATTGGTTAACCGG
6._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
7._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
8._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
9._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
10._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
11._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
12._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
13._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
14._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
15._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
16._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
17._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
18._GC-01-052-3-07
AACCAGGGCCCCTTAATTGGTTAACCGG
19._GC-01-52-3-7
TTCCAACC__GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAACCCCGGTTGGTTAATTAACC
1._NA
AATTGGAACCCCGGTTGGTTAATTAACC
2._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
3._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
4._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
5._NA
AATTGGAACCCCGGTTGGTTAATTAACC
6._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
7._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
8._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
9._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
10._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
11._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
12._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
13._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
14._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
15._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
16._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
17._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
18._GC-01-052-3-07
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._GC-01-52-3-7
AAAACCAACCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCGGGGTTTTCCTTTT
1._NA
GGTTCCAAGGAACCGGGGTTTTCCTTTT
2._GC-01-052-3-07
GGTTCCAAGGAACCGGGGTTTTCCTTTT
3._GC-01-052-3-07
GGTTCCAAGGAACCGGGGTTTTCCTTTT
4._GC-01-052-3-07
GGTTCCAAGGAACCGGGGTTTTCCTTTT
5._NA
GGTTCCAAGGAACCGGGGTTTTCCTTTT
6._GC-01-052-3-07
GGTTCCAAGGAACCGGGGTTTT__TTTT
7._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
8._GC-01-052-3-07
GGTTCCAAGGAACCGGGG__TTCCTTTT
9._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
10._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
11._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
12._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
13._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
14._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
15._GC-01-052-3-07
GGTTCCAAGGAACCGGGGGTTTCCTTTT
16._NA
GGTTCCAAGGAACCGGGGGTTTCCTTTT
17._GC-01-052-3-07
GGTTCCAAGGAACCGGGGGTTTCCTTTT
18._GC-01-052-3-07
GGTTTTAAGGAACCGGAAGGTTCCCCTT
19._GC-01-52-3-7
CC__GG__GGAAGGGGGGAAAAGGAAAA
 5758596061626364656667686970
_Input profile
AACCTTCCAAGGGGAAAATTGGGGTTCC
1._NA
AACCTTCCAAGGGGAAAATTGGGGTTCC
2._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
3._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
4._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
5._NA
AACCTTCCAAGGGGAAAATTGGGGTTCC
6._GC-01-052-3-07
AACCTTCCAAGGGGAAAATTGGGGTTCC
7._NA
AACCTTCCAAGGGG__AATTGGGGTTCC
8._GC-01-052-3-07
AACCTTCCAAGGGGACAATTGGGGTTCC
9._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
10._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
11._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
12._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
13._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
14._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
15._GC-01-052-3-07
AACCTTCCAAGGGGACAATTGGGGTTCC
16._NA
AACCTTCCAAGGGGACAATTGGGGTTCC
17._GC-01-052-3-07
AACCTTCCAAGGGGAC__TTGGGGTTCC
18._GC-01-052-3-07
GGCCTTCCAAGGGG__AATTGGGGTTCC
19._GC-01-52-3-7
AAGGAAGGAAGGGGAAAAAACCGG____
 7172737475767778798081828384
_Input profile
GGTTCCAACCAAAACCGGCCTTAATTTT
1._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
2._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
3._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
4._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
5._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
6._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
7._NA
GGTTACAACCAAAACCGGCCTTAATTTT
8._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
9._NA
GGTTACAACCAAAACCGGCCTTAATTTT
10._NA
GGTTACAACCAAAACCGGCCTTAATTTT
11._NA
GGTTACAACCAAAACCGGCCTTAATTTT
12._NA
GGTTACAACCAAAACCGGCCTTAATTTT
13._NA
GGTTACAACCAAAACCGGCCTTAATTTT
14._NA
GGTTACAACCAAAACCGGCCTTAATTTT
15._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
16._NA
GGTTACAACCAAAACCGGCCTTAATTTT
17._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
18._GC-01-052-3-07
GGTTACAGACCCAGACGGCCATCCTTCT
19._GC-01-52-3-7
__AACCAACCAA__CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
9._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
10._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
16._NA
CTTTAACTCC__TTAAGGX_XX_XX_XX_XX_X
17._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-01-052-3-07
CCCTAGCCCCTTTTATGGX_XX_XX_XX_XX_X
19._GC-01-52-3-7
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_88 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._SIAL_88 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._SIAL_88 GC-01-052-3-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

7._SIAL_88 NA

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SIAL_88 GC-01-052-3-07

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._SIAL_88 NA

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240