SNP Profiles matching CCN-51

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
1._GC-07-019-1-21	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
2._GC-07-019-1-21	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
3._GC-07-019-1-21	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
4._GC-06-4-1-04	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
5._GC-07-019-1-21	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	__	CC	CT
6._GC-07-019-1-21	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
7._GC-07-019-1-21	AA	AC	CT	__	GG	__	__	CC	CT	CC	GG	TT	CC	CT
8._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
9._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
10._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
11._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
12._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
13._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
14._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
15._CCN_51	AA	AC	CT	__	__	__	__	__	CT	CC	GG	__	CC	__
16._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__
17._CCN_51	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
1._GC-07-019-1-21	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
2._GC-07-019-1-21	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
3._GC-07-019-1-21	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
4._GC-06-4-1-04	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
5._GC-07-019-1-21	AA	AC	AA	AG	CG	CG	__	CT	AA	TT	AG	TT	AA	CC
6._GC-07-019-1-21	AA	AC	AA	AG	CG	CG	GG	CT	AA	TT	AG	TT	AA	CC
7._GC-07-019-1-21	AA	AC	AA	__	CG	CG	GG	CT	AA	__	AG	TT	AA	CC
8._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
9._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
10._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
11._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
12._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
13._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
14._CCN_51	__	__	__	AG	__	__	__	__	__	__	__	TT	AA	__
15._CCN_51	__	__	__	__	__	__	GG	__	__	__	__	TT	AA	__
16._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
17._CCN_51	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
1._GC-07-019-1-21	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
2._GC-07-019-1-21	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
3._GC-07-019-1-21	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
4._GC-06-4-1-04	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
5._GC-07-019-1-21	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
6._GC-07-019-1-21	CC	AA	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
7._GC-07-019-1-21	__	AA	TT	__	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG
8._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
9._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
10._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
11._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
12._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
13._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
14._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
15._CCN_51	__	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
16._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__
17._CCN_51	CC	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
1._GC-07-019-1-21	__	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
2._GC-07-019-1-21	__	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
3._GC-07-019-1-21	__	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
4._GC-06-4-1-04	CT	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
5._GC-07-019-1-21	CT	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
6._GC-07-019-1-21	__	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
7._GC-07-019-1-21	CT	CC	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT
8._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
9._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
10._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
11._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
12._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
13._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
14._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
15._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
16._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__
17._CCN_51	__	__	__	__	CT	__	__	__	__	__	__	__	__	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
1._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
2._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
3._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
4._GC-06-4-1-04	CC	CT	GT	AG	__	CT	TT	AA	GG	AG	AC	AA	TT	GG
5._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
6._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
7._GC-07-019-1-21	CC	CT	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG
8._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
9._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
10._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
11._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
12._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
13._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
14._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
15._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
16._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG
17._CCN_51	CC	CT	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
1._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
2._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
3._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
4._GC-06-4-1-04	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
5._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
6._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
7._GC-07-019-1-21	GG	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT
8._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
9._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
10._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
11._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
12._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
13._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
14._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
15._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT
16._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	CT
17._CCN_51	__	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	CT

	85	86	87	88	89	90	91
_Input profile	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-07-019-1-21	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-07-019-1-21	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-07-019-1-21	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-06-4-1-04	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-07-019-1-21	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-07-019-1-21	CT	__	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-07-019-1-21	CT	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._CCN_51	CT	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CCN_51 GC-07-019-1-21

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

1._CCN_51 GC-07-019-1-21

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

2._CCN_51 GC-07-019-1-21

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

3._CCN_51 GC-07-019-1-21

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

4._CCN_51 GC-06-4-1-04

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

5._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

6._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

7._CCN_51 GC-07-019-1-21

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

8._CCN_51

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

9._CCN_51

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

10._CCN_51

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

11._CCN_51

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

12._CCN_51

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

13._CCN_51

identical
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

14._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

15._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

16._CCN_51

98.8 %
40 shared markers

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USAPEN

Dapeng Zhang, 2016

17._CCN_51

98.8 %
40 shared markers

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USASPC

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP497	44	TcSNP894	45	TcSNP1063
46	TcSNP1126	47	TcSNP1270	48	TcSNP606	49	TcSNP329	50	TcSNP689
51	TcSNP944	52	TcSNP1242	53	TcSNP1383	54	TcSNP547	55	TcSNP776
56	TcSNP1309	57	TcSNP151	58	TcSNP1520	59	TcSNP799	60	TcSNP899
61	TcSNP226	62	TcSNP1439	63	TcSNP1442	64	TcSNP193	65	TcSNP25
66	TcSNP364	67	TcSNP144	68	TcSNP230	69	TcSNP560	70	TcSNP723
71	TcSNP731	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414