SNP Profiles matching EET 233A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTCTTT
1._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
2._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
3._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
4._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
5._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
6._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
7._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
8._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
9._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
10._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
11._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
12._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
13._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
14._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
15._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
16._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
17._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
18._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
19._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
20._EET_233_[ECU]___
__CTCC____TT__CC____TTTT____
21._EET_233_[ECU]___
TTCTCC________CTTTAG__TT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGGGCCAACCGGAATTCCGG
1._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
2._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
3._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
4._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
5._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGG__TTCCGG
6._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
7._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
8._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
9._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
10._EET_233_[ECU]___
____GG____GG________AATT__GG
11._EET_233_[ECU]___
____GG____GG________AATT__GG
12._EET_233_[ECU]___
____GG____GG________AATT__GG
13._EET_233_[ECU]___
____GG____GG________AATT__GG
14._EET_233_[ECU]___
____GG____GG________AATT__GG
15._EET_233_[ECU]___
____GG____GG________AATT__GG
16._EET_233_[ECU]___
____GG____GG________AATT__GG
17._EET_233_[ECU]___
____GG____GG__________TT__GG
18._EET_233_[ECU]___
____GG____GG________AATT__GG
19._EET_233_[ECU]___
____GG____GG________AATT__GG
20._EET_233_[ECU]___
________GG________GG__TTCCGG
21._EET_233_[ECU]___
____GG____GG________AATT__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTTTAGCGACAGGTGGTTGGCTGGCC
1._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
2._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
3._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGCC
4._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
5._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
6._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
7._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
8._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGCC
9._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGCC
10._EET_233_[ECU]___
AT______CG__AGGT____GG______
11._EET_233_[ECU]___
AT______CG__AGGT____GG______
12._EET_233_[ECU]___
AT______CG__AGGT____GG______
13._EET_233_[ECU]___
AT______CG__AGGT____GG______
14._EET_233_[ECU]___
AT______CG__AGGT____GG______
15._EET_233_[ECU]___
AT______CG__AGGT____GG______
16._EET_233_[ECU]___
AT______CG__AGGT____GG______
17._EET_233_[ECU]___
AT______CG__AGGT____GG______
18._EET_233_[ECU]___
AT______CG__AGGT____GG______
19._EET_233_[ECU]___
AT______CG__AGGT____GG______
20._EET_233_[ECU]___
______AGGGACAGGT____GGCT____
21._EET_233_[ECU]___
AT______CG__AGGT____GG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGGGTTCTAGAGAACCACGGAGTTTTCT
1._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGGAGTTTTCT
2._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGGAGTTTTCT
3._EET_233_[ECU]___
GGGGTTCTAG__AACCACGGAGTTTTCT
4._EET_233_[ECU]___
GGGGTTCTAGAGAACC__GGAGTTTTCT
5._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGGAGTTTTCT
6._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGGAGTT__CT
7._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGGAGTTTTCT
8._EET_233_[ECU]___
GGGGTTCTAGAGAACCACGG__TTTTCT
9._EET_233_[ECU]___
__GGTTCTAGAGAACCACGGAGTTTTCT
10._EET_233_[ECU]___
______CT__________________CT
11._EET_233_[ECU]___
______CT__________________CT
12._EET_233_[ECU]___
______CT__________________CT
13._EET_233_[ECU]___
______CT__________________CT
14._EET_233_[ECU]___
______CT__________________CT
15._EET_233_[ECU]___
______CT__________________CT
16._EET_233_[ECU]___
______CT__________________CT
17._EET_233_[ECU]___
______CT__________________CT
18._EET_233_[ECU]___
______CT__________________CT
19._EET_233_[ECU]___
______CT__________________CT
20._EET_233_[ECU]___
__GGTT____AG____________TTCT
21._EET_233_[ECU]___
______CT__________________CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
1._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
2._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
3._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
4._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
5._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
6._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
7._EET_233_[ECU]___
CTTT__CCCCCTCCCCGGAAGTGGAGTT
8._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGGAAGTGGAGTT
9._EET_233_[ECU]___
CTTTGGCCCCCTCCCCGG__GTGGAGTT
10._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
11._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
12._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
13._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
14._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
15._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
16._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
17._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
18._EET_233_[ECU]___
CT____CC__CTCCCC____GTGG____
19._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
20._EET_233_[ECU]___
__TT__CCCCCTCC__GGAAGTGGAG__
21._EET_233_[ECU]___
CT____CC__CTCCCC__AAGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCCCGGAAACAGACCCCCAACTTT
1._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
2._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
3._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
4._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
5._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
6._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
7._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
8._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
9._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAACTTT
10._EET_233_[ECU]___
__AACC__________ACCC____CTTT
11._EET_233_[ECU]___
__AACC__________ACCC____CTTT
12._EET_233_[ECU]___
__AACC__________ACCC____CTTT
13._EET_233_[ECU]___
__AACC__________ACCC____CTTT
14._EET_233_[ECU]___
__AACC__________ACCC____CTTT
15._EET_233_[ECU]___
__AACC__________ACCC____CTTT
16._EET_233_[ECU]___
__AACC__________ACCC____CTTT
17._EET_233_[ECU]___
__AACC__________ACCC____CTTT
18._EET_233_[ECU]___
__AACC__________ACCC____CTTT
19._EET_233_[ECU]___
__AACC__________ACCC____CTTT
20._EET_233_[ECU]___
________________ACCC____CT__
21._EET_233_[ECU]___
__AACC__________ACCC____CTTT
 85 86 87 88 89 90 91        
_Input profile
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
1._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
2._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
3._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
4._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
5._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
6._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
7._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
8._EET_233_[ECU]___
CCTTAGCTCC__CCX_XX_XX_XX_XX_XX_XX_X
9._EET_233_[ECU]___
CCTTAGCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
10._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
11._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
12._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
13._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
14._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
15._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
16._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
17._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
18._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X
19._EET_233_[ECU]___
CC__AG__CC__CCX_XX_XX_XX_XX_XX_XX_X
20._EET_233_[ECU]___
____AG__CCGG__X_XX_XX_XX_XX_XX_XX_X
21._EET_233_[ECU]___
CC__AG__CCGGCCX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_233_[ECU] GC-05-085-2-36

 
Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

1._EET_233_[ECU] GC-05-149-4-02

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._EET_233_[ECU] GC-05-178-4-31

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._EET_233_[ECU] GC-05-085-2-36

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

4._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._EET_233_[ECU] GC-05-149-4-02

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_233_[ECU] GC-05-178-4-31

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._EET_233_[ECU] GC-05-178-4-31

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

9._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

10._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

12._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

13._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

14._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

17._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

18._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

19._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

20._EET_233_[ECU] RUQ_1517

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_233_[ECU] RUQ_1517

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP497 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414