SNP Profiles matching ICS95

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 Key

 1234567891011121314
_Input profile
CCCTATGGCTCCCTCCCGCGAGGTAGCT
1._RUQ_1144
CGCTATGGCT____CCCGCG______CT
2._ICS_95
CG______CT__CTCC__CG________
3._ICS_95
CG______CT__CTCC__CG________
4._ICS_95
CG______CT__CTCC__CG________
5._ICS_95
CG______CT__CTCC__CG________
6._ICS_95
CG______CT__CTCC__CG________
7._ICS_95
CG______CT__CTCC__CG________
8._ICS_95
CG______CT__CTCC__CG________
9._ICS_95
CG______CT__CTCC__CG________
10._ICS_95
CG______CT__CTCC__CG________
11._ICS_95
CG______CT__CTCC__CG________
12._ICS_95
CG______CT__CTCC__CG________
13._ICS_95
CG______CT__CTCC__CG________
14._ICS_95
CG______CT__CTCC__CG________
15._ICS_95
CG______CT__CTCC__CG________
16._ICS_95
CG______CT__CTCC__CG________
17._ICS_95
CG______CT__CTCC__CG________
18._ICS_95
CG______CT__CTCC__CG________
19._ICS_95
CG______CT__CTCC__CG________
20._ICS_95
CG______CT__CTCC__CG________
21._ICS_95
CG______CT__CTCC__CG________
22._ICS_95
CG______CT__CTCC__CG________
23._ICS_95
CG______CT__CTCC__CG________
24._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
25._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
26._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
27._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
28._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
29._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
30._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
31._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
32._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
33._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
34._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
35._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
36._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
37._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
38._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
39._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
40._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
41._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
42._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
43._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
44._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
45._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
46._GC-02-2-1-02
CGCTATGGCTCC__CCCGCGAAGTAGCT
47._GC-01-128-7-05
CGCTATGGCTCCCT__CGCGAAGTAGCT
48._GC-02-2-1-02
CGCTATGG__CC__CCCGCGAAGTAGCT
49._GC-03-039-4-03
CGCTATGGCT__CTCCCGCGAAGTAGCT
50._ICS_95
GG______CT__CTCC__CG________
51._ICS_95
GG______CT__CTCC__CG________
52._ICS_95
GG______CT__CTCC__CG________
53._NA
CGCTATGGCCCCCTCCCGCGAAGTAGCT
 151617181920212223242526  
_Input profile
CCCCCGCTATAAGGCGACAGCTACX_XX_X
1._RUQ_1144
CCCCCG__ATAAGGCGACAGCTACX_XX_X
2._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
3._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
4._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
5._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
6._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
7._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
8._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
9._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
10._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
11._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
12._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
13._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
14._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
15._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
16._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
17._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
18._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
19._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
20._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
21._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
22._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
23._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
24._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
25._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
26._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
27._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
28._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
29._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
30._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
31._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
32._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
33._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
34._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
35._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
36._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
37._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
38._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
39._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
40._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
41._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
42._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
43._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
44._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
45._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
46._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
47._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
48._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
49._GC-03-039-4-03
CCCCCGCTATAA__CGACAGCTACX_XX_X
50._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
51._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
52._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
53._NA
CCCCCGTTATAAGGCGAC__CCACX_XX_X

Input profile: ICS_95 RUQ_1144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_95 RUQ_1144

97.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 15
 Dapeng Zhang, 2016

3._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 13
 Dapeng Zhang, 2016

4._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 11
 Dapeng Zhang, 2016

5._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 9
 Dapeng Zhang, 2016

6._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 5
 Dapeng Zhang, 2016

7._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 3
 Dapeng Zhang, 2016

8._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 1
 Dapeng Zhang, 2016

9._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 14
 Dapeng Zhang, 2016

10._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 10
 Dapeng Zhang, 2016

11._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 7
 Dapeng Zhang, 2016

12._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 5
 Dapeng Zhang, 2016

13._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 3
 Dapeng Zhang, 2016

14._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 1
 Dapeng Zhang, 2016

15._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 3 > FP
 Dapeng Zhang, 2016

16._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 2 > FP
 Dapeng Zhang, 2016

17._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 16
 Dapeng Zhang, 2016

18._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 9
 Dapeng Zhang, 2016

19._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 6
 Dapeng Zhang, 2016

20._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 5
 Dapeng Zhang, 2016

21._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 4
 Dapeng Zhang, 2016

22._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 3
 Dapeng Zhang, 2016

23._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 2
 Dapeng Zhang, 2016

24._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

25._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

26._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

31._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

32._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

33._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

34._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

37._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

38._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

39._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

40._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

41._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

42._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

43._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

44._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

45._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

46._ICS_95 GC-02-2-1-02

96 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL13
Notes: PL13 FP13
 Mars, 2018

47._ICS_95 GC-01-128-7-05

96 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

48._ICS_95 GC-02-2-1-02

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL1
Notes: PL1 FP4
 Mars, 2018

49._ICS_95 GC-03-039-4-03

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

50._ICS_95

92.3 %
13 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

51._ICS_95

92.3 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P26 56
 Dapeng Zhang, 2016

52._ICS_95

92.3 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 10 C0204 2A
 Dapeng Zhang, 2016

53._B_12_[POU] NA

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144