SNP Profiles matching UF 667

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	GT	CC	AC	GT	CT	TT	AA
1._RUQ_56	AT	CT	CG	GG	GG	TT	GG	GT	CC	AC	GT	CT	TT	AA
2._RUQ_1677	AT	CT	CG	GG	GG	TT	GG	GT	__	AC	GT	CT	TT	AA
3._RUQ_41	AT	CT	CG	GG	GG	TT	GG	GT	CT	AC	GT	CT	TT	AA
4._RUQ_690	AT	CT	CG	GG	GG	TT	GG	GT	__	AC	GT	CT	TT	AA
5._RUQ_51	AT	CC	CG	GG	GG	TT	GG	GG	CC	AC	GT	CC	TT	AA
6._RUQ_1432	AT	CT	CG	GG	GG	TT	GT	GT	__	AC	GT	CT	TT	AA
7._RUQ_938B	__	__	__	GG	AG	__	GG	__	__	__	__	CT	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
1._RUQ_56	CC	AA	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
2._RUQ_1677	CC	AA	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
3._RUQ_41	CC	AT	TT	CT	AA	CG	GG	GG	TT	AA	CC	CT	CT	AG
4._RUQ_690	CC	AT	TT	CT	AA	CG	GG	GG	TT	AA	CC	CT	CT	AG
5._RUQ_51	CC	AT	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
6._RUQ_1432	CC	AT	CT	CT	AA	CG	GG	CG	TT	AA	CC	CT	CT	AG
7._RUQ_938B	CC	__	__	CC	AA	CG	__	__	__	AA	AC	__	CT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GT	CT	CG	AG	CC	AG	TT	CC	AC	AT	CC	AG	AC	CT
1._RUQ_56	GT	CT	CG	AG	CG	AG	TT	CC	AC	AT	CC	AG	AC	CT
2._RUQ_1677	GT	CT	CG	AG	CG	AG	TT	CC	AC	AT	CC	AG	CC	CT
3._RUQ_41	GT	CT	CG	AG	CG	AG	TT	CT	CC	AT	CG	AG	AC	CT
4._RUQ_690	GT	CT	CG	AG	CC	AG	TT	CT	CC	AT	CG	AG	CC	CT
5._RUQ_51	GT	CT	GG	AG	CG	AG	TT	CC	AC	AT	CC	AG	AC	CT
6._RUQ_1432	GT	CT	CG	AG	CG	AG	TT	CC	AC	AT	CC	AG	CC	CT
7._RUQ_938B	__	CT	CG	AG	__	AG	TT	CC	__	AT	__	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
1._RUQ_56	AC	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
2._RUQ_1677	AC	CC	__	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
3._RUQ_41	AC	CC	AC	__	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
4._RUQ_690	AC	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
5._RUQ_51	AC	CC	AC	AG	CC	TT	AG	GG	AG	CT	AC	AT	GG	GG
6._RUQ_1432	AC	CC	AC	AG	AC	TT	AG	GT	AG	CT	AC	AT	GT	GG
7._RUQ_938B	AC	CC	AC	AG	__	TT	AG	__	AG	CT	__	AT	GT	GG

	57	58	59	60
_Input profile	CC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_56	AC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1677	CC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_41	CC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_690	AC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_51	AC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_1432	CC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_938B	CC	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_667 RUQ_55

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

1._UF_676 RUQ_56

98.3 %
60 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

2._UF_168 RUQ_1677

98.3 %
58 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

3._SC_1_[UNK] RUQ_41

91.5 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.513 Cri
0.480

4._SC_20_[COL] RUQ_690

91.5 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.513 Cri
0.480

5._SPEC_160_/9 RUQ_51

90.8 %
60 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.451 Cri
0.543

6._ICS_40 RUQ_1432

90.7 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.489 Cri
0.505

7._ICS_46 RUQ_938B

90.6 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13