SNP Profiles matching AMAZ 11 [CHA]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAATTCCGGTTAAACTTAAGGGGTTAA
1._LCT_EEN_163_/A___
CCAATTCCGGGTAAAATTAAGGGGTTAA
2._AMAZ_11___
CCAATTCCGGGTAAAATTAAGGGGTTAA
3._AGU_3339_[CHA]___
CCAATTCCGGTTAAACTTAAGGGGTTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCCCCCCCAAAAGGAACCCCTTGGCC
1._LCT_EEN_163_/A___
AACCCCACCCAAAAGGAACCCCTTAGCC
2._AMAZ_11___
AACCCCACCCAAAAGGAACCCCTTAGCC
3._AGU_3339_[CHA]___
AGCCCCAACCCCAAGGATCCCCTTGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACCCCGGAACCTTCCTTCCCCGGGGAA
1._LCT_EEN_163_/A___
AACCCCTTAACCTTCCTTCCCCGGGGAA
2._AMAZ_11___
AACCCCTTAACCTTCCTTCCCCGGGGAA
3._AGU_3339_[CHA]___
AGCCCCGGAACCTTCCTTCCCCGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCCCAACCGGTTCCAACCGGGGTTGGAG
1._LCT_EEN_163_/A___
CCCTAACCGGTTCCAACCGGGGTTGGAG
2._AMAZ_11___
CCCTAACCGGTTCCAA__GGGGTTGGAG
3._AGU_3339_[CHA]___
CCTTAACCGGTTCCAA__GGGGTTGGGG
 57 58 59            
_Input profile
CCTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._LCT_EEN_163_/A___
CCTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_11___
CCTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AGU_3339_[CHA]___
CCTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NAPO_25_[CHA] RUQ_1547

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._LCT_EEN_163_/A RUQ_178

93.2 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._AMAZ_11 RUQ_1600

93.1 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._AGU_3339_[CHA] RUQ_746

92.2 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1230
51TcSNP1237 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527