SNP Profiles matching LCT_EEN_46

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAAAAAAGGAACCAAGGAAAAAACC
1._DOM_30___
CCACAAAAAAGGAACCAAGGAAAAAACC
2._NACIONAL___
CCCCAAAAAAGGAACCAAGGAAAAAAAC
3._FSC_13___
CCAAAAAAAAGGAACCAAGGAAAAAACC
4._GDL_3___
CCAAAAAAAAGGAACCAAGGAAAAAACC
5._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
6._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
7._MAR_9___
CCCCAAAAAAGGAACCAAGGAAAAAACC
8._BE_10___
CCCCAAAAAAGGAACCAAGGGGAAAACC
9._B_12_/2_[POU]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
10._SC_9_[UNK]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
11._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._LCT_EEN_46___
CCCCAAAAAAGGAACCAAGGGGAAAACC
13._UF_273___
CCCCAAAAAAGGAACCAAGGGGAAAACC
14._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
15._SIAL_42___
CCCCAAAAAAGGAACCAAGGGGAAAACC
16._GU_207___
CCCCAAAAAAGGAACCAAGGGGAAAACC
17._SIAL_88___
CCCCAAAAAAGGAACCAAGGAAAAAACC
18._SIAL_70___
CCCCAAAAAAGGAACCAAGGAGAAAACC
19._JA_9_/37_[POU]___
CCAAAAAAAAGGAACCAAGGAAAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGAAAAGGAAAACCGGCCAAAAGG
1._DOM_30___
AAAAGGAGAAGGAAAACCGGCCAAAAGG
2._NACIONAL___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
3._FSC_13___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
4._GDL_3___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
5._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
6._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
7._MAR_9___
AGAAGGAAAAGGAAAACCGGCCAAAAGG
8._BE_10___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
9._B_12_/2_[POU]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
10._SC_9_[UNK]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
11._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
12._LCT_EEN_46___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
13._UF_273___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
14._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
15._SIAL_42___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
16._GU_207___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
17._SIAL_88___
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
18._SIAL_70___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
19._JA_9_/37_[POU]___
GGAAGGAA__GGAAAACCGGCCAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTAGAAGGAAGGGGGGCCTTTTGGGG
1._DOM_30___
AATTAGAAGGAAGGGGGGCCTTTTGGGG
2._NACIONAL___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
3._FSC_13___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
4._GDL_3___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
5._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
6._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
7._MAR_9___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
8._BE_10___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
9._B_12_/2_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
10._SC_9_[UNK]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
11._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
12._LCT_EEN_46___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
13._UF_273___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
14._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
15._SIAL_42___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
16._GU_207___
AATTGGAAGGAAGGGGGG__TTTTGGGG
17._SIAL_88___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
18._SIAL_70___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
19._JA_9_/37_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCCCGGAAAAGG
1._DOM_30___
AAAAGGGGGGATGGAACCCCGGAAAAGG
2._NACIONAL___
AAAAGGGGGGTTGGAACCCCGGAAAACC
3._FSC_13___
AAAAGGGGGGTTGGAACCCCGGAAAAGG
4._GDL_3___
AAAAGGGGGGTTGGAACCCCGGAAAAGG
5._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
6._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
7._MAR_9___
AAAAGGGGGGAAGGAACCCCGGAAAAGG
8._BE_10___
AAAAGGGGGGTTGGAACCCCGGAAAACC
9._B_12_/2_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
10._SC_9_[UNK]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
11._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
12._LCT_EEN_46___
AAAAGGGGGGTTGGAACCCCGGAAAACC
13._UF_273___
AAAAGGGGGGTTGGAACCCCGGAAAACC
14._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
15._SIAL_42___
AAAAGGGGGGTTGGAACCCCGGAAAACC
16._GU_207___
AAAAGGGGGGTTGGAACCCCGGAAAACC
17._SIAL_88___
AAAAGGGGGGTTGGAACCCCGGAAAACC
18._SIAL_70___
AAAAGGGGGGTTGGGGCCCCGGAAAACC
19._JA_9_/37_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAAGGGAAGGAACCGGAAAAAAAACCCC
1._DOM_30___
AAGGGGAAGGAACCGGAACCAAAAACCC
2._NACIONAL___
AAGGGGAAGGAACCGGAAAAAAAACCCC
3._FSC_13___
AAGGAAAAGGAACCGGAAAAAAAAAACC
4._GDL_3___
AAGGAAAAGGAACCGGAAAAAAAAAACC
5._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
6._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
7._MAR_9___
AAGGGGAAGGAACCGGAAAAAAAAAACC
8._BE_10___
AAGGAAAAGGAACCGGAAAAAAAAAACC
9._B_12_/2_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
10._SC_9_[UNK]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
11._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
12._LCT_EEN_46___
AAGGAAAAGGAACCGGAAAAAAAAAACC
13._UF_273___
AAGGAAAAGGAACCGGAAAAAAAAAACC
14._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
15._SIAL_42___
AAGGAAAAGGAACCGGAAAAAAAAAACC
16._GU_207___
AAGGAAAAGGAACCGGAAAAAAAAAACC
17._SIAL_88___
AAGGAAAAGGAACCGGAAAAAAAAAACC
18._SIAL_70___
ACGGAAAAGGAACCGGAAAAAAAAAACC
19._JA_9_/37_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCGGGGGAACCAAGGGGAAAAAAX_XX_X
1._DOM_30___
GGCCGGGGAGACAAGGGGAAAAAAX_XX_X
2._NACIONAL___
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
3._FSC_13___
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
4._GDL_3___
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
5._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
6._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
7._MAR_9___
GGCCGGGGGGCCAAGGGGAAAAAAX_XX_X
8._BE_10___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
9._B_12_/2_[POU]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
10._SC_9_[UNK]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
11._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
12._LCT_EEN_46___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
13._UF_273___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
14._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
15._SIAL_42___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
16._GU_207___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
17._SIAL_88___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
18._SIAL_70___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
19._JA_9_/37_[POU]___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X

Input profile: GS_13 RUQ_683

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._DOM_30 RUQ_549

94.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._NACIONAL NACIONAL_Fld#_189_Plt#_5

94.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 189, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

3._FSC_13 RUQ_1535

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GDL_3 RUQ_553

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._MATINA_1_/6 RUQ_1715

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._MATINA_1_/6 MITC-000114

93.9 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

7._MAR_9 RUQ_557

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._BE_10 GC-08-90-2-13

91.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

9._B_12_/2_[POU] RUQ_436

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._SC_9_[UNK] RUQ_44

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._AMELONADO_[VAR] MITC-000366

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._LCT_EEN_46 MITC-000412

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

13._UF_273 MITC-000717

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

14._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

91.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

15._SIAL_42 SIAL_42_Fld#_146_Plt#_6

91.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

16._GU_207 GC-01-56-3-11

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._SIAL_88 GC-01-52-3-7

90.9 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._SIAL_70 GC-01-39-2-16

90.2 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._JA_9_/37_[POU] GC-08-71-1-93

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998