SNP Profiles matching EET 64 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGAGCCATAGAGAGAGAC
1._JA_1_/19_[POU]___
AAACAGAAAAGGAGCCATAGAGAGAAAC
2._EET_64_[ECU]___
ACACAGACAAGGAGACATAGAGAGAAAC
3._SCR_2___
ACACAGACAAGGAGCCAAAGAGAGAAAC
4._UF_36___
ACACAGAAAAGGAGCCATAGGGAGAAAC
5._EET_103_[ECU]___
ACCCAGACAAGGAGCCATAGAGAGAAAC
6._EET_54_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
7._EET_67_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
8._UF_666___
ACACAGACAAGGAGCCATAGAGAGAAAC
9._UF_705___
ACACAGACAAGGAGCCATAGAGAGAAAC
10._UF_29___
ACACAGACAAGGAGCCATAGAGAGAAAC
11._EET_59_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
12._JA_10_/12_[POU]___
ACACAGACAAGGAGACATAGAGAGAGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACAGAGACGGAGAGCCAGCGAGACAG
1._JA_1_/19_[POU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
2._EET_64_[ECU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
3._SCR_2___
AAACAGAGACGGAGAGCCAGCGAGACAG
4._UF_36___
AGACAGAGACGGAGAGCCAGCGAGCCAG
5._EET_103_[ECU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
6._EET_54_[ECU]___
AGACAGAAACGGAGAGCCAGCGAGACAG
7._EET_67_[ECU]___
AGACAGAAACGGAGAGCCAGCGAGACAG
8._UF_666___
AAACAGAAACGGAGAGCCAGCGAGACAG
9._UF_705___
AAACAGAAACGGAGAGCCAGCGAGACAG
10._UF_29___
AAACAGAA__GGAGAGCCAGCGAGACAG
11._EET_59_[ECU]___
AGACAGAGACGGAGGGCCAGCGAGACAG
12._JA_10_/12_[POU]___
AGACGGAAACGGAGAGCCAGCGAGACAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGTTGGACGGAAGGGGCGCCATATAGAG
1._JA_1_/19_[POU]___
AGTTGGACGGAAGGGGCGCCATATAGGG
2._EET_64_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGGG
3._SCR_2___
AGTTGGACGGAAGGGGCGCCATATGGAG
4._UF_36___
AGATAGACGGAAGGAGCGCCATATGGGG
5._EET_103_[ECU]___
AGATGGACGGAAGGGGCGCCATATGGGG
6._EET_54_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGAG
7._EET_67_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGAG
8._UF_666___
AGATGGACGGAAGGGGCGCCATATGGGG
9._UF_705___
AGATGGACGGAAGGGGCGCCATATGGGG
10._UF_29___
AGATGGACGGAAGGGGCGCCATATGGAG
11._EET_59_[ECU]___
AGTTGGCCCGAAGGGGCGCCATATGGGG
12._JA_10_/12_[POU]___
AGTTGGACCGAAGGGGCGCCATATGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGAGAAGGAGACACAGACAGCG
1._JA_1_/19_[POU]___
ATAGAGAGAGAAGGAGACACAGACAGCG
2._EET_64_[ECU]___
ATAGAGAGGGAAGGAGACACAGACAGCG
3._SCR_2___
ATAGAGAGAGATGGAGACACAGACAGCG
4._UF_36___
ATAGAGAGAGAAGGAGACACAGACAGCG
5._EET_103_[ECU]___
ATAGAGAGGGAAGGAGACACAGACAGCG
6._EET_54_[ECU]___
ATAGAAAGAGAAGGAGACACAGACAGCG
7._EET_67_[ECU]___
ATAGAAAGAGAAGGAGACACAGACAGCG
8._UF_666___
ATAGAGAGAGATGGAGACACAGACAGCG
9._UF_705___
ATAGAGAGAGATGGAGACACAGACAGCG
10._UF_29___
ATAGAGAGAGATGGAGACACAGACAGCG
11._EET_59_[ECU]___
ATAGAAAGGGAAGGAGACACAGACAGCG
12._JA_10_/12_[POU]___
ATAAAAAGAGAAGGAGACACAGACAGCG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAGAAAGAAACAGAAAAAAAAACCG
1._JA_1_/19_[POU]___
CCGGAGAGAGAGCCAGAAAAAAAACCCG
2._EET_64_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
3._SCR_2___
ACGGGGAGAGAACCAGAAAAAAAAACCG
4._UF_36___
CCGGAGAAAGAAACAGAAAAAAAAACCG
5._EET_103_[ECU]___
CCGGGGAAAGAAACAGAAAAAAAACCCG
6._EET_54_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
7._EET_67_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
8._UF_666___
ACGGGGAAAGAACCAGAAAAAAAAACCG
9._UF_705___
ACGGGGAAAGAACCAGAAAAAAAAACCG
10._UF_29___
ACGGGGAGAGAACCAGAAAAAAAAACCG
11._EET_59_[ECU]___
CCGGAGAAAAAACCAGAAAAAAAAACCG
12._JA_10_/12_[POU]___
CCGGAGAAAAAACCAGAAAAAAAACCCC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AACCAGCGAGCCAGGGGGATAAAGX_XX_X
1._JA_1_/19_[POU]___
AGCCAGCGAGCCAGGGGGATAAAAX_XX_X
2._EET_64_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
3._SCR_2___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
4._UF_36___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
5._EET_103_[ECU]___
AGCCAGCGAGCCAAGGAGATAAAGX_XX_X
6._EET_54_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
7._EET_67_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
8._UF_666___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
9._UF_705___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
10._UF_29___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
11._EET_59_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
12._JA_10_/12_[POU]___
AGCCAGCGAGACAAGGGGATAAAAX_XX_X

Input profile: JA_5_/5_[POU] RUQ_1539

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._JA_1_/19_[POU] RUQ_352

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_64_[ECU] EET_64_[ECU]_Fld#_34_Plt#_6

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 34, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

3._SCR_2 SCR_2_Fld#_112_Plt#_2

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 112, Tree: 2
 Mars, 2018

4._UF_36 UF_36_Fld#_106_Plt#_5

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 106, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

5._EET_103_[ECU] EET_103_[ECU]_Fld#_124_Plt#_6

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 124, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

6._EET_54_[ECU] EET_54_[ECU]_Fld#_139_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 139, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

7._EET_67_[ECU] EET_67_[ECU]_Fld#_67_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 67, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._UF_666 UF_666_Fld#_71_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 71, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

9._UF_705 UF_705_Fld#_76_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 76, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

10._UF_29 UF_29_Fld#_20_Plt#_5

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

11._EET_59_[ECU] RUQ_791

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._JA_10_/12_[POU] RUQ_456

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998