SNP Profiles matching LCT_EEN_46

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAAAAAAGGAACCAAGGAAAAAGCC
1._JA_9_/37_[POU]___
CCAAAAAAAAGGAACCAAGGAAAAAACC
2._SIAL_169___
CCACAAAAAAGGAACCAAGGAAAAAACC
3._SIAL_505___
CCACAAAAAAGGAACCAAGGAAAAAACC
4._SIAL_88___
CCCCAAAAAAGGAACCAAGGAAAAAACC
5._POUND_5_/C___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
6._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
7._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
8._SIC_1___
CCAAAAAAAAGGAACCAAGGGGAAAACC
9._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
10._SIC_628___
CCCCAAAAAAGGAACCAAGGAAAAAACC
11._CC_37___
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._SIC_2___
CCAAAAAAAAGGAACCAAGGGGAAAACC
13._SIC_7___
CCCCAAAAAAGGAACCAAGGGGAAAACC
14._BE_10___
CCCCAAAAAAGGAACCAAGGGGAAAACC
15._SIAL_70___
CCCCAAAAAAGGAACCAAGGAGAAAACC
16._B_12_/2_[POU]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
17._FSC_13___
CCAAAAAAAAGGAACCAAGGAAAAAACC
18._GDL_3___
CCAAAAAAAAGGAACCAAGGAAAAAACC
19._SC_9_[UNK]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
20._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
21._LCT_EEN_46___
CCCCAAAAAAGGAACCAAGGGGAAAACC
22._UF_273___
CCCCAAAAAAGGAACCAAGGGGAAAACC
23._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
24._SIAL_42___
CCCCAAAAAAGGAACCAAGGGGAAAACC
25._SIAL_44___
CCCCAAAAAAGGAACCAAGGAAAAAAAC
26._SIAL_98___
CCCCAAAAAAGGAACCAAGGAAAAAACC
27._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAAAAA
28._GU_207___
CCCCAAAAAAGGAACCAAGGGGAAAACC
29._GU_300___
CCACAAAAAAGGAACCAAGGAAAAAACC
30._BE_8___
CCAAAAACAAGGAACCAAGGAAAAAACC
31._EEG_8___
CCACAAAAAAGGAACCAAGGAGAAAAAC
32._N_38_[T38]___
CCCCAAAAAAGGAAACAAGGGGAAAACC
33._Round_Leaf_Cacao___
CCCCAAAAAAGGAACCAAGGAAAAGGCC
34._Round_Leaf_Cacao___
CCCCAAAAAAGGAACCAAGGAAAAGGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAAGGAAAAACAGCCAAAAGGAA
1._JA_9_/37_[POU]___
GGAAGGAAGGAAAACCGGCCAAAAGGAA
2._SIAL_169___
AGAAGGAAGGAAAAACGGCCAGAAGGAA
3._SIAL_505___
AGAAGGAAGGAAAAACGGCCAGAAGGAA
4._SIAL_88___
AGAAGGAAGGAAAAAAGGCCAAAAGGAA
5._POUND_5_/C___
GGAAGGAAGGAAAAAAGGCCGGAAGGAA
6._MATINA_1_/6___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
7._MATINA_1_/6___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
8._SIC_1___
GGAAGGAAGGAAAAAAGGCCAAAAGGAA
9._CATONGO_1___
GGAAGGAAGGAAAAAAGGCCGGAAGGAA
10._SIC_628___
GGAAGGAAGGAAAAAAGGCCAAAAGGAA
11._CC_37___
AGAAGGAAGGAAAAACGGCCAAAAGGAA
12._SIC_2___
GGAAGGAAGGAAAAAAGGCCAAAAGGAA
13._SIC_7___
AGAAGGAAGGAAAAACGGCCAAAAGGAA
14._BE_10___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
15._SIAL_70___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
16._B_12_/2_[POU]___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
17._FSC_13___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
18._GDL_3___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
19._SC_9_[UNK]___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
20._AMELONADO_[VAR]___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
21._LCT_EEN_46___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
22._UF_273___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
23._AMELONADO_[VAR]___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
24._SIAL_42___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
25._SIAL_44___
AAAAAGAAGGAAAACCAGCCAGAAGGAA
26._SIAL_98___
AAAAAAAAGGAAAACCGGCCAAAAGGAA
27._CATONGO_1___
AAAAGGAAGGAAAAACAACCGGAAGGAA
28._GU_207___
AAAAGGAAGGAAAACCGGCCAAAAGGAA
29._GU_300___
GGAAGGAAGGAAAAAAAGCCAGAAGGAA
30._BE_8___
AAAAGGAAGGAAAGCCGGCCAAAAAGAA
31._EEG_8___
AAAAAGAAGGAAAACCGGCCAAAAGGAA
32._N_38_[T38]___
AAAAGGAAGGAAAAACGGCCAAAAGGAA
33._Round_Leaf_Cacao___
AAAAAAAAGGAAAAAAGGCCGGAAGGAA
34._Round_Leaf_Cacao___
AAAAAAAAGGAAAAAAGGCCGGAAGGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
1._JA_9_/37_[POU]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
2._SIAL_169___
TTGGAAGGAAGGGGGGCCTT__GGGGAA
3._SIAL_505___
TTGGAAGGAAGGGGGG__TTTTGGGGAA
4._SIAL_88___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
5._POUND_5_/C___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
6._MATINA_1_/6___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
7._MATINA_1_/6___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
8._SIC_1___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
9._CATONGO_1___
TTGGAAGGAAGGGGGG__TTTTGGGGAA
10._SIC_628___
TTGGAAGGAAGGGGGG__TTTTGGGGAA
11._CC_37___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
12._SIC_2___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
13._SIC_7___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
14._BE_10___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
15._SIAL_70___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
16._B_12_/2_[POU]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
17._FSC_13___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
18._GDL_3___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
19._SC_9_[UNK]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
20._AMELONADO_[VAR]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
21._LCT_EEN_46___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
22._UF_273___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
23._AMELONADO_[VAR]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
24._SIAL_42___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
25._SIAL_44___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
26._SIAL_98___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
27._CATONGO_1___
TTGGAAGGAAGGGGGG__TTTTGGGGAA
28._GU_207___
TTGGAAGGAAGGGGGG__TTTTGGGGAA
29._GU_300___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
30._BE_8___
TTGGAAGGAGGGGGGGCCTTATGGGGAA
31._EEG_8___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
32._N_38_[T38]___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
33._Round_Leaf_Cacao___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
34._Round_Leaf_Cacao___
TTGGAAGGAAGGGGGGCCTTTTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCACGGAAAACGAC
1._JA_9_/37_[POU]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
2._SIAL_169___
AGGGGGGGTTGGAGCCCCGGAAAACGAC
3._SIAL_505___
AGGGGGGGTTGGAGCCCCGGAAAACGAC
4._SIAL_88___
AAGGGGGGTTGGAACCCCGGAAAACCAA
5._POUND_5_/C___
AAGGGGGGTTGGAACCCCGGAAAACCAA
6._MATINA_1_/6___
AAGGGGGGTTGGAACCCCGGAAAACCAA
7._MATINA_1_/6___
AAGGGGGGTTGGAACCCCGGAAAACCAA
8._SIC_1___
AAGGGGGGTTGGAACCAAGGAAAACCCC
9._CATONGO_1___
AAGGGGGGTTGGAACCCCGGAAAACCAA
10._SIC_628___
AAGGGGGGTTGGAACCCCGGAAAACCCC
11._CC_37___
AGGGGGGGTTGGAACCCCGGAAAACCAC
12._SIC_2___
GGGGGGGGTTGGAACCAAGGAAAACCAC
13._SIC_7___
AGGGGGGGTTGGAACCCCGGAAAACCAC
14._BE_10___
AAGGGGGGTTGGAACCCCGGAAAACCAA
15._SIAL_70___
AAGGGGGGTTGGGGCCCCGGAAAACCAC
16._B_12_/2_[POU]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
17._FSC_13___
AAGGGGGGTTGGAACCCCGGAAAAGGAA
18._GDL_3___
AAGGGGGGTTGGAACCCCGGAAAAGGAA
19._SC_9_[UNK]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
20._AMELONADO_[VAR]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
21._LCT_EEN_46___
AAGGGGGGTTGGAACCCCGGAAAACCAA
22._UF_273___
AAGGGGGGTTGGAACCCCGGAAAACCAA
23._AMELONADO_[VAR]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
24._SIAL_42___
AAGGGGGGTTGGAACCCCGGAAAACCAA
25._SIAL_44___
AAGGGGGGTTGGAGCCCCGGAAAACGAA
26._SIAL_98___
AAGGGGGGTTGGAACCAAGGAAAACCCC
27._CATONGO_1___
AGGGGGGGTTGGAACCCCGGAAAACCAA
28._GU_207___
AAGGGGGGTTGGAACCCCGGAAAACCAA
29._GU_300___
GGGGGGGGTTGGAGCCCCGGAAAACCAA
30._BE_8___
AAGGGGGGTTGGAGCCCCGGAAAACCAA
31._EEG_8___
AGGGGGGGATGGAACCCCGGAAAACGAA
32._N_38_[T38]___
AAGGGGGGATGGAACCCCGGAAAACCAC
33._Round_Leaf_Cacao___
AAGGGGGGTTGGGGCCCCGGAAAACCAA
34._Round_Leaf_Cacao___
AAGGGGGGTTGGGGCCCCGGAAAACCAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAAAAAAACCGG
1._JA_9_/37_[POU]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
2._SIAL_169___
GGAAAAGGAACCGGAAAAACAAAACCGG
3._SIAL_505___
GGAAAAGGAACCGGAAAAACAAAACCGG
4._SIAL_88___
GGAAAAGGAACCGGAAAAAAAAAACCGG
5._POUND_5_/C___
GGAAAAGGAACCGGAAAAAAAAAACCGG
6._MATINA_1_/6___
GGGGAAGGAACCGGAAAAAAAAAACCGG
7._MATINA_1_/6___
GGGGAAGGAACCGGAAAAAAAAAACCGG
8._SIC_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
9._CATONGO_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
10._SIC_628___
GGAAAAGGAACCGGAAAAAAAAAACCGG
11._CC_37___
GGAAAAGGAACCGGAAAAACAAAACCGG
12._SIC_2___
GGAAAAGGAACCGGAAAAAAAAAACCGG
13._SIC_7___
GGAAAAGGAACCGGAAAAACAAAACCGG
14._BE_10___
GGAAAAGGAACCGGAAAAAAAAAACCGG
15._SIAL_70___
GGAAAAGGAACCGGAAAAAAAAAACCGG
16._B_12_/2_[POU]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
17._FSC_13___
GGAAAAGGAACCGGAAAAAAAAAACCGG
18._GDL_3___
GGAAAAGGAACCGGAAAAAAAAAACCGG
19._SC_9_[UNK]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
20._AMELONADO_[VAR]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
21._LCT_EEN_46___
GGAAAAGGAACCGGAAAAAAAAAACCGG
22._UF_273___
GGAAAAGGAACCGGAAAAAAAAAACCGG
23._AMELONADO_[VAR]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
24._SIAL_42___
GGAAAAGGAACCGGAAAAAAAAAACCGG
25._SIAL_44___
GGAAAAGGAACCGGAAAAAAAAAACCGG
26._SIAL_98___
GGAAAAGGAACCGGAAAAAAAAAACCGG
27._CATONGO_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
28._GU_207___
GGAAAAGGAACCGGAAAAAAAAAACCGG
29._GU_300___
GGAAAAGGAACCGGAAAAACAAAACCGG
30._BE_8___
GGAAAAGGAACCGGAAAAACAAAACCGG
31._EEG_8___
GGAAAAAGAAACGGAAAAACAAAACCGG
32._N_38_[T38]___
GGAAAAGGAACCGGAGAAAAAAAACCAG
33._Round_Leaf_Cacao___
GGAAAAGGAACCGGAAAAAAAAAACCGG
34._Round_Leaf_Cacao___
GGAAAAGGAACCGGAAAAAAAAAACCGG
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
1._JA_9_/37_[POU]___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
2._SIAL_169___
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
3._SIAL_505___
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
4._SIAL_88___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
5._POUND_5_/C___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
6._MATINA_1_/6___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
7._MATINA_1_/6___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
8._SIC_1___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
9._CATONGO_1___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
10._SIC_628___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
11._CC_37___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
12._SIC_2___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
13._SIC_7___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
14._BE_10___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
15._SIAL_70___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
16._B_12_/2_[POU]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
17._FSC_13___
CCGGGGGGCCAAGGGGAAAAAAX_XX_XX_X
18._GDL_3___
CCGGGGGGCCAAGGGGAAAAAAX_XX_XX_X
19._SC_9_[UNK]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
20._AMELONADO_[VAR]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
21._LCT_EEN_46___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
22._UF_273___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
23._AMELONADO_[VAR]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
24._SIAL_42___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
25._SIAL_44___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
26._SIAL_98___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
27._CATONGO_1___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
28._GU_207___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
29._GU_300___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
30._BE_8___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
31._EEG_8___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
32._N_38_[T38]___
CCGGGGAAACAAGGAGAAAAGGX_XX_XX_X
33._Round_Leaf_Cacao___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
34._Round_Leaf_Cacao___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X

Input profile: EEG_27 GC-08-254-8-22

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._JA_9_/37_[POU] GC-08-71-1-93

95.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._SIAL_169 GC-01-41-2-18

95 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._SIAL_505 GC-01-48-3-3

95 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 3, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

4._SIAL_88 GC-01-52-3-7

94.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._POUND_5_/C GC-01-118-6-15

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._MATINA_1_/6 RUQ_1715

93.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._MATINA_1_/6 MITC-000114

93.8 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

8._SIC_1 SIC_1_Fld#_51_Plt#_5

93.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 51, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

9._CATONGO_1 GC-08-109-3-8

93.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._SIC_628 GC-06-15-1-15

93.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._CC_37 CC_37_Fld#_69B_Plt#_4

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 69B, Tree: 4
 Mars, 2018

12._SIC_2 SIC_2_Fld#_120_Plt#_6

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 120, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

13._SIC_7 SIC_7_Fld#_68_Plt#_6

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 68, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

14._BE_10 GC-08-90-2-13

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

15._SIAL_70 GC-01-39-2-16

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._B_12_/2_[POU] RUQ_436

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._FSC_13 RUQ_1535

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GDL_3 RUQ_553

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._SC_9_[UNK] RUQ_44

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._AMELONADO_[VAR] MITC-000366

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

21._LCT_EEN_46 MITC-000412

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._UF_273 MITC-000717

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

24._SIAL_42 SIAL_42_Fld#_146_Plt#_6

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

25._SIAL_44 SIAL_44_Fld#_66_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 66, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

26._SIAL_98 SIAL_98_Fld#_84_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 84, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

27._CATONGO_1 GC-08-277-8-49

92.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

28._GU_207 GC-01-56-3-11

92.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

29._GU_300 GC-08-63-1-85

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 85, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

30._BE_8 RUQ_1694

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

31._EEG_8 RUQ_1726

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

32._N_38_[T38] RUQ_1159

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._Round_Leaf_Cacao ROUND_LEAF_Fld#_203_Plt#_1

90.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 203, Tree: 1
Notes: TARS_Cacao_collection
 Mars, 2018

34._Round_Leaf_Cacao Round_Leaf_Cacao_Fld#_203_Plt#_2

90.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 203, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998