SNP Profiles matching SCA-3

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	GG	CC	AA	GG	GG	CC	AT	AA	GG	GG	GG	AA
1._MITC-000057	CC	CC	GG	CC	AA	GG	GG	CC	AA	AA	AG	GG	GG	AA
2._GC-03-4-1-4	CC	CC	GG	CC	AA	GG	GG	CC	TT	AA	GG	AG	GG	AA
3._RUQ_234	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
4._MITC-000344	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
5._MITC-000345	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
6._MITC-000347	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
7._MITC-000348	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
8._MITC-000349	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
9._MITC-000343	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
10._MITC-000376	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
11._MITC-000452	CC	CC	GG	CC	AA	AG	GG	CC	AT	AA	GG	AG	GG	AA
12._RUQ_1686	CC	CC	GG	CC	AA	GG	GG	CC	AT	AA	GG	AG	GG	AA
13._RUQ_1689	CC	CC	GG	CC	AA	GG	GG	CC	AT	AA	GG	AG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	GG	CC	AA	GG	GG	AC	AG	GG	AA	CC	AA
1._MITC-000057	AA	AC	AA	GG	CC	AA	AG	GG	AC	AA	GG	AA	CC	AA
2._GC-03-4-1-4	AA	CC	AA	AG	CC	AA	GG	GG	AC	AA	GG	AG	CC	AA
3._RUQ_234	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
4._MITC-000344	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
5._MITC-000345	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
6._MITC-000347	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
7._MITC-000348	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
8._MITC-000349	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
9._MITC-000343	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
10._MITC-000376	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
11._MITC-000452	AA	CC	AG	GG	CC	AA	GG	GG	AC	AG	GG	AG	CC	AA
12._RUQ_1686	AA	CC	AA	AG	CC	AA	GG	GG	AA	AA	GG	AG	CC	AA
13._RUQ_1689	AA	CC	AA	AG	CC	AA	GG	GG	AA	AA	GG	AG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	CC	CG	AA	AG	AG	CG	AA	AA	AA	AA	GG
1._MITC-000057	GG	AA	GG	CC	CG	AG	GG	AG	CG	AA	AA	AA	AA	GG
2._GC-03-4-1-4	GG	AA	GG	CC	GG	AA	GG	AG	CG	AA	AA	AA	AA	GG
3._RUQ_234	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
4._MITC-000344	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
5._MITC-000345	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
6._MITC-000347	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
7._MITC-000348	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
8._MITC-000349	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
9._MITC-000343	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
10._MITC-000376	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
11._MITC-000452	GG	AA	GG	CC	GG	AA	AG	AG	CC	AA	AT	AA	AA	GG
12._RUQ_1686	GG	AA	GG	CC	GG	AA	GG	AA	CG	AA	AT	AA	AG	GG
13._RUQ_1689	GG	AA	GG	CC	GG	AA	GG	AA	CG	AA	AT	AA	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	AG	AA	AA	CC	GG	AC	AA	AA	CC	GG	CC
1._MITC-000057	AA	GG	AA	GG	AA	AA	__	GG	AC	AA	AA	CC	GG	CC
2._GC-03-4-1-4	AA	GG	AA	AA	AG	AA	CC	GG	AA	AA	AA	CC	GG	CC
3._RUQ_234	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
4._MITC-000344	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
5._MITC-000345	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
6._MITC-000347	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
7._MITC-000348	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
8._MITC-000349	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
9._MITC-000343	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
10._MITC-000376	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
11._MITC-000452	AA	GG	AA	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
12._RUQ_1686	AA	GG	AG	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG
13._RUQ_1689	AA	GG	AG	AG	AG	AA	CC	GG	AA	AA	AA	CC	GG	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
1._MITC-000057	CC	GG	GG	AA	AG	AA	CC	AA	AA	AA	CC	AA	CC	GG
2._GC-03-4-1-4	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
3._RUQ_234	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
4._MITC-000344	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
5._MITC-000345	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
6._MITC-000347	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
7._MITC-000348	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
8._MITC-000349	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
9._MITC-000343	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
10._MITC-000376	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
11._MITC-000452	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
12._RUQ_1686	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
13._RUQ_1689	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AA	GG	AA	GG	AG	CC	AG	CC	GG	TT	GG	AA	X_X	X_X
1._MITC-000057	AA	GG	AA	GG	AG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
2._GC-03-4-1-4	AA	GG	AA	CG	GG	CC	AG	CC	GG	TT	GG	AA	X_X	X_X
3._RUQ_234	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
4._MITC-000344	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
5._MITC-000345	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
6._MITC-000347	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
7._MITC-000348	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
8._MITC-000349	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
9._MITC-000343	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
10._MITC-000376	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
11._MITC-000452	AA	GG	AA	CG	GG	CC	GG	CC	GG	TT	GG	AA	X_X	X_X
12._RUQ_1686	AA	GG	AA	GG	AG	CC	AG	CC	GG	TT	GG	AA	X_X	X_X
13._RUQ_1689	AA	GG	AA	GG	AG	CC	AG	CC	GG	TT	GG	AA	X_X	X_X

Input profile: SCA_3 GC-01-123-6-20

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

1._SCA_11 MITC-000057

94.4 %
81 shared markers

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USDA-SHRS, United States of America

Mars, 2018

2._SCA_19 GC-03-4-1-4

92.1 %
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 3, Block: 1, Rep: 4, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

3._SCA_6 RUQ_234

91.5 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._SCA_6 MITC-000344

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

5._SCA_6 MITC-000345

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

6._SCA_6 MITC-000347

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

7._SCA_6 MITC-000348

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

8._SCA_6 MITC-000349

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

9._SCA_6 MITC-000343

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

10._SCA_6 MITC-000376

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

11._SCA_6 MITC-000452

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

12._SCA_11 RUQ_1686

90.9 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

13._SCA_12 RUQ_1689

90.9 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998

SNP Profiles matching SCA-3

Show/Hide Profiles

Input profile: SCA_3 GC-01-123-6-20

1._SCA_11 MITC-000057

94.4 % 81 shared markers

2._SCA_19 GC-03-4-1-4

92.1 % 82 shared markers

3._SCA_6 RUQ_234

91.5 % 82 shared markers

4._SCA_6 MITC-000344

91.5 % 82 shared markers

5._SCA_6 MITC-000345

91.5 % 82 shared markers

6._SCA_6 MITC-000347

91.5 % 82 shared markers

7._SCA_6 MITC-000348

91.5 % 82 shared markers

8._SCA_6 MITC-000349

91.5 % 82 shared markers

9._SCA_6 MITC-000343

91.5 % 82 shared markers

10._SCA_6 MITC-000376

91.5 % 82 shared markers

11._SCA_6 MITC-000452

91.5 % 82 shared markers

12._SCA_11 RUQ_1686

90.9 % 82 shared markers

13._SCA_12 RUQ_1689

90.9 % 82 shared markers

94.4 %
81 shared markers

92.1 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

90.9 %
82 shared markers

90.9 %
82 shared markers