SNP Profiles matching LCT_EEN_46

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAAAAAAGGAACCAAGGAAAAAACC
1._SIAL_169___
CCACAAAAAAGGAACCAAGGAAAAAACC
2._GU_300___
CCACAAAAAAGGAACCAAGGAAAAAACC
3._CC_37___
CCCCAAAAAAGGAACCAAGGGGAAAACC
4._SIC_7___
CCCCAAAAAAGGAACCAAGGGGAAAACC
5._EEG_27___
CCAAAAAAAAGGAACCAAGGAAAAAGCC
6._SIAL_88___
CCCCAAAAAAGGAACCAAGGAAAAAACC
7._SIAL_70___
CCCCAAAAAAGGAACCAAGGAGAAAACC
8._SIC_628___
CCCCAAAAAAGGAACCAAGGAAAAAACC
9._JA_9_/37_[POU]___
CCAAAAAAAAGGAACCAAGGAAAAAACC
10._SIAL_44___
CCCCAAAAAAGGAACCAAGGAAAAAAAC
11._BE_10___
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
13._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAAAAA
14._GU_207___
CCCCAAAAAAGGAACCAAGGGGAAAACC
15._POUND_5_/C___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
16._B_12_/2_[POU]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
17._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
18._SC_9_[UNK]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
19._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
20._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
21._LCT_EEN_46___
CCCCAAAAAAGGAACCAAGGGGAAAACC
22._UF_273___
CCCCAAAAAAGGAACCAAGGGGAAAACC
23._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
24._SIAL_42___
CCCCAAAAAAGGAACCAAGGGGAAAACC
25._BE_8___
CCAAAAACAAGGAACCAAGGAAAAAACC
26._EEG_8___
CCACAAAAAAGGAACCAAGGAGAAAAAC
27._SIC_2___
CCAAAAAAAAGGAACCAAGGGGAAAACC
28._FSC_13___
CCAAAAAAAAGGAACCAAGGAAAAAACC
29._GDL_3___
CCAAAAAAAAGGAACCAAGGAAAAAACC
30._Round_Leaf_Cacao___
CCCCAAAAAAGGAACCAAGGAAAAGGCC
31._Round_Leaf_Cacao___
CCCCAAAAAAGGAACCAAGGAAAAGGCC
32._SIAL_98___
CCCCAAAAAAGGAACCAAGGAAAAAACC
33._SIC_1___
CCAAAAAAAAGGAACCAAGGGGAAAACC
34._N_38_[T38]___
CCCCAAAAAAGGAAACAAGGGGAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAAAAGGAAAAACGGCCAGAAGG
1._SIAL_169___
AGAAGGAAAAGGAAAAACGGCCAGAAGG
2._GU_300___
GGAAGGAAAAGGAAAAAAAGCCAGAAGG
3._CC_37___
AGAAGGAAACGGAAAAACGGCCAAAAGG
4._SIC_7___
AGAAGGAAACGGAAAAACGGCCAAAAGG
5._EEG_27___
AGAAGGAA__GGAAAAACAGCCAAAAGG
6._SIAL_88___
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
7._SIAL_70___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
8._SIC_628___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
9._JA_9_/37_[POU]___
GGAAGGAA__GGAAAACCGGCCAAAAGG
10._SIAL_44___
AAAAAGAAACGGAAAACCAGCCAGAAGG
11._BE_10___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
12._CATONGO_1___
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
13._CATONGO_1___
AAAAGGAAAAGGAAAAACAACCGGAAGG
14._GU_207___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
15._POUND_5_/C___
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
16._B_12_/2_[POU]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
17._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
18._SC_9_[UNK]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
19._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
20._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
21._LCT_EEN_46___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
22._UF_273___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
23._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
24._SIAL_42___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
25._BE_8___
AAAAGGAAAAGGAAAGCCGGCCAAAAAG
26._EEG_8___
AAAAAGAAACGGAAAACCGGCCAAAAGG
27._SIC_2___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
28._FSC_13___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
29._GDL_3___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
30._Round_Leaf_Cacao___
AAAAAAAAAAGGAAAAAAGGCCGGAAGG
31._Round_Leaf_Cacao___
AAAAAAAAAAGGAAAAAAGGCCGGAAGG
32._SIAL_98___
AAAAAAAAAAGGAAAACCGGCCAAAAGG
33._SIC_1___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
34._N_38_[T38]___
AAAAGGAAAAGGAAAAACGGCCAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGTTTTGGGGAA
1._SIAL_169___
AATTGGAAGGAAGGGGGGTT__GGGGAA
2._GU_300___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
3._CC_37___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
4._SIC_7___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
5._EEG_27___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
6._SIAL_88___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
7._SIAL_70___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
8._SIC_628___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
9._JA_9_/37_[POU]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
10._SIAL_44___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
11._BE_10___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
12._CATONGO_1___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
13._CATONGO_1___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
14._GU_207___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
15._POUND_5_/C___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
16._B_12_/2_[POU]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
17._MATINA_1_/6___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
18._SC_9_[UNK]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
19._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
20._MATINA_1_/6___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
21._LCT_EEN_46___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
22._UF_273___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
23._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
24._SIAL_42___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
25._BE_8___
AATTGGAAGGAGGGGGGGTTATGGGGAA
26._EEG_8___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
27._SIC_2___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
28._FSC_13___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
29._GDL_3___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
30._Round_Leaf_Cacao___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
31._Round_Leaf_Cacao___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
32._SIAL_98___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
33._SIC_1___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
34._N_38_[T38]___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGTTGGAGCCCCGGAAAACGAC
1._SIAL_169___
AGGGGGGGTTGGAGCCCCGGAAAACGAC
2._GU_300___
GGGGGGGGTTGGAGCCCCGGAAAACCAA
3._CC_37___
AGGGGGGGTTGGAACCCCGGAAAACCAC
4._SIC_7___
AGGGGGGGTTGGAACCCCGGAAAACCAC
5._EEG_27___
AAGGGGGGTTGGAACCACGGAAAACGAC
6._SIAL_88___
AAGGGGGGTTGGAACCCCGGAAAACCAA
7._SIAL_70___
AAGGGGGGTTGGGGCCCCGGAAAACCAC
8._SIC_628___
AAGGGGGGTTGGAACCCCGGAAAACCCC
9._JA_9_/37_[POU]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
10._SIAL_44___
AAGGGGGGTTGGAGCCCCGGAAAACGAA
11._BE_10___
AAGGGGGGTTGGAACCCCGGAAAACCAA
12._CATONGO_1___
AAGGGGGGTTGGAACCCCGGAAAACCAA
13._CATONGO_1___
AGGGGGGGTTGGAACCCCGGAAAACCAA
14._GU_207___
AAGGGGGGTTGGAACCCCGGAAAACCAA
15._POUND_5_/C___
AAGGGGGGTTGGAACCCCGGAAAACCAA
16._B_12_/2_[POU]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
17._MATINA_1_/6___
AAGGGGGGTTGGAACCCCGGAAAACCAA
18._SC_9_[UNK]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
19._AMELONADO_[VAR]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
20._MATINA_1_/6___
AAGGGGGGTTGGAACCCCGGAAAACCAA
21._LCT_EEN_46___
AAGGGGGGTTGGAACCCCGGAAAACCAA
22._UF_273___
AAGGGGGGTTGGAACCCCGGAAAACCAA
23._AMELONADO_[VAR]___
AAGGGGGGTTGGAACCCCGGAAAACCAA
24._SIAL_42___
AAGGGGGGTTGGAACCCCGGAAAACCAA
25._BE_8___
AAGGGGGGTTGGAGCCCCGGAAAACCAA
26._EEG_8___
AGGGGGGGATGGAACCCCGGAAAACGAA
27._SIC_2___
GGGGGGGGTTGGAACCAAGGAAAACCAC
28._FSC_13___
AAGGGGGGTTGGAACCCCGGAAAAGGAA
29._GDL_3___
AAGGGGGGTTGGAACCCCGGAAAAGGAA
30._Round_Leaf_Cacao___
AAGGGGGGTTGGGGCCCCGGAAAACCAA
31._Round_Leaf_Cacao___
AAGGGGGGTTGGGGCCCCGGAAAACCAA
32._SIAL_98___
AAGGGGGGTTGGAACCAAGGAAAACCCC
33._SIC_1___
AAGGGGGGTTGGAACCAAGGAAAACCCC
34._N_38_[T38]___
AAGGGGGGATGGAACCCCGGAAAACCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAACAAAACCGG
1._SIAL_169___
GGAAAAGGAACCGGAAAAACAAAACCGG
2._GU_300___
GGAAAAGGAACCGGAAAAACAAAACCGG
3._CC_37___
GGAAAAGGAACCGGAAAAACAAAACCGG
4._SIC_7___
GGAAAAGGAACCGGAAAAACAAAACCGG
5._EEG_27___
GGAAAAGGAACCGGAAAAAAAAAACCGG
6._SIAL_88___
GGAAAAGGAACCGGAAAAAAAAAACCGG
7._SIAL_70___
GGAAAAGGAACCGGAAAAAAAAAACCGG
8._SIC_628___
GGAAAAGGAACCGGAAAAAAAAAACCGG
9._JA_9_/37_[POU]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
10._SIAL_44___
GGAAAAGGAACCGGAAAAAAAAAACCGG
11._BE_10___
GGAAAAGGAACCGGAAAAAAAAAACCGG
12._CATONGO_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
13._CATONGO_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
14._GU_207___
GGAAAAGGAACCGGAAAAAAAAAACCGG
15._POUND_5_/C___
GGAAAAGGAACCGGAAAAAAAAAACCGG
16._B_12_/2_[POU]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
17._MATINA_1_/6___
GGGGAAGGAACCGGAAAAAAAAAACCGG
18._SC_9_[UNK]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
19._AMELONADO_[VAR]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
20._MATINA_1_/6___
GGGGAAGGAACCGGAAAAAAAAAACCGG
21._LCT_EEN_46___
GGAAAAGGAACCGGAAAAAAAAAACCGG
22._UF_273___
GGAAAAGGAACCGGAAAAAAAAAACCGG
23._AMELONADO_[VAR]___
GGAAAAGGAACCGGAAAAAAAAAACCGG
24._SIAL_42___
GGAAAAGGAACCGGAAAAAAAAAACCGG
25._BE_8___
GGAAAAGGAACCGGAAAAACAAAACCGG
26._EEG_8___
GGAAAAAGAAACGGAAAAACAAAACCGG
27._SIC_2___
GGAAAAGGAACCGGAAAAAAAAAACCGG
28._FSC_13___
GGAAAAGGAACCGGAAAAAAAAAACCGG
29._GDL_3___
GGAAAAGGAACCGGAAAAAAAAAACCGG
30._Round_Leaf_Cacao___
GGAAAAGGAACCGGAAAAAAAAAACCGG
31._Round_Leaf_Cacao___
GGAAAAGGAACCGGAAAAAAAAAACCGG
32._SIAL_98___
GGAAAAGGAACCGGAAAAAAAAAACCGG
33._SIC_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
34._N_38_[T38]___
GGAAAAGGAACCGGAGAAAAAAAACCAG
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
1._SIAL_169___
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
2._GU_300___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
3._CC_37___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
4._SIC_7___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
5._EEG_27___
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
6._SIAL_88___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
7._SIAL_70___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
8._SIC_628___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
9._JA_9_/37_[POU]___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
10._SIAL_44___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
11._BE_10___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
12._CATONGO_1___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
13._CATONGO_1___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
14._GU_207___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
15._POUND_5_/C___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
16._B_12_/2_[POU]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
17._MATINA_1_/6___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
18._SC_9_[UNK]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
19._AMELONADO_[VAR]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
20._MATINA_1_/6___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
21._LCT_EEN_46___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
22._UF_273___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
23._AMELONADO_[VAR]___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
24._SIAL_42___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
25._BE_8___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
26._EEG_8___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
27._SIC_2___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
28._FSC_13___
CCGGGGGGCCAAGGGGAAAAAAX_XX_XX_X
29._GDL_3___
CCGGGGGGCCAAGGGGAAAAAAX_XX_XX_X
30._Round_Leaf_Cacao___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
31._Round_Leaf_Cacao___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
32._SIAL_98___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
33._SIC_1___
CCGGGGAACCAAGGGGAAAAGGX_XX_XX_X
34._N_38_[T38]___
CCGGGGAAACAAGGAGAAAAGGX_XX_XX_X

Input profile: SIAL_505 GC-01-48-3-3

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 3, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SIAL_169 GC-01-41-2-18

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_300 GC-08-63-1-85

95.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 85, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._CC_37 CC_37_Fld#_69B_Plt#_4

95.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 69B, Tree: 4
 Mars, 2018

4._SIC_7 SIC_7_Fld#_68_Plt#_6

95.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 68, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

5._EEG_27 GC-08-254-8-22

95 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._SIAL_88 GC-01-52-3-7

94.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._SIAL_70 GC-01-39-2-16

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._SIC_628 GC-06-15-1-15

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._JA_9_/37_[POU] GC-08-71-1-93

93.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._SIAL_44 SIAL_44_Fld#_66_Plt#_5

93.2 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 66, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

11._BE_10 GC-08-90-2-13

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

12._CATONGO_1 GC-08-109-3-8

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._CATONGO_1 GC-08-277-8-49

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._GU_207 GC-01-56-3-11

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._POUND_5_/C GC-01-118-6-15

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._B_12_/2_[POU] RUQ_436

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._MATINA_1_/6 RUQ_1715

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._SC_9_[UNK] RUQ_44

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._AMELONADO_[VAR] MITC-000366

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

20._MATINA_1_/6 MITC-000114

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

21._LCT_EEN_46 MITC-000412

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._UF_273 MITC-000717

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

24._SIAL_42 SIAL_42_Fld#_146_Plt#_6

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

25._BE_8 RUQ_1694

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._EEG_8 RUQ_1726

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

27._SIC_2 SIC_2_Fld#_120_Plt#_6

92 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 120, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

28._FSC_13 RUQ_1535

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._GDL_3 RUQ_553

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

30._Round_Leaf_Cacao ROUND_LEAF_Fld#_203_Plt#_1

91.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 203, Tree: 1
Notes: TARS_Cacao_collection
 Mars, 2018

31._Round_Leaf_Cacao Round_Leaf_Cacao_Fld#_203_Plt#_2

91.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 203, Tree: 2
 Mars, 2018

32._SIAL_98 SIAL_98_Fld#_84_Plt#_5

91.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 84, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

33._SIC_1 SIC_1_Fld#_51_Plt#_5

91.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 51, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

34._N_38_[T38] RUQ_1159

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998