SNP Profiles matching EET 64 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGAGCCATAGAGAGAAAC
1._UF_666___
ACACAGACAAGGAGCCATAGAGAGAAAC
2._UF_705___
ACACAGACAAGGAGCCATAGAGAGAAAC
3._SCR_2___
ACACAGACAAGGAGCCAAAGAGAGAAAC
4._JA_5_/5_[POU]___
ACACAGACAAGGAGCCATAGAGAGAGAC
5._EET_103_[ECU]___
ACCCAGACAAGGAGCCATAGAGAGAAAC
6._EET_54_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
7._EET_67_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
8._JA_1_/19_[POU]___
AAACAGAAAAGGAGCCATAGAGAGAAAC
9._EET_64_[ECU]___
ACACAGACAAGGAGACATAGAGAGAAAC
10._UF_36___
ACACAGAAAAGGAGCCATAGGGAGAAAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAGAAGGAGAGCCAGCGAGACAGAG
1._UF_666___
AAACAGAAGGAGAGCCAGCGAGACAGAG
2._UF_705___
AAACAGAAGGAGAGCCAGCGAGACAGAG
3._SCR_2___
AAACAGAGGGAGAGCCAGCGAGACAGAG
4._JA_5_/5_[POU]___
AGACAGAGGGAGAGCCAGCGAGACAGAG
5._EET_103_[ECU]___
AGACAGAGGGAGAGCCAGCGAGACAGAG
6._EET_54_[ECU]___
AGACAGAAGGAGAGCCAGCGAGACAGAG
7._EET_67_[ECU]___
AGACAGAAGGAGAGCCAGCGAGACAGAG
8._JA_1_/19_[POU]___
AGACAGAGGGAGAGCCAGCGAGACAGAG
9._EET_64_[ECU]___
AGACAGAGGGAGAGCCAGCGAGACAGAG
10._UF_36___
AGACAGAGGGAGAGCCAGCGAGCCAGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATGGACGGAAGGGGCGCCATATGGAGAT
1._UF_666___
ATGGACGGAAGGGGCGCCATATGGGGAT
2._UF_705___
ATGGACGGAAGGGGCGCCATATGGGGAT
3._SCR_2___
TTGGACGGAAGGGGCGCCATATGGAGAT
4._JA_5_/5_[POU]___
TTGGACGGAAGGGGCGCCATATAGAGAT
5._EET_103_[ECU]___
ATGGACGGAAGGGGCGCCATATGGGGAT
6._EET_54_[ECU]___
TTGGACCGAAGGGGCGCCATATGGAGAT
7._EET_67_[ECU]___
TTGGACCGAAGGGGCGCCATATGGAGAT
8._JA_1_/19_[POU]___
TTGGACGGAAGGGGCGCCATATAGGGAT
9._EET_64_[ECU]___
TTGGACCGAAGGGGCGCCATATGGGGAT
10._UF_36___
ATAGACGGAAGGAGCGCCATATGGGGAT
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGAGAGAGATGGAGACACAGACAGCGAC
1._UF_666___
AGAGAGAGATGGAGACACAGACAGCGAC
2._UF_705___
AGAGAGAGATGGAGACACAGACAGCGAC
3._SCR_2___
AGAGAGAGATGGAGACACAGACAGCGAC
4._JA_5_/5_[POU]___
AGAGAGAGAAGGAGACACAGACAGCGCC
5._EET_103_[ECU]___
AGAGAGGGAAGGAGACACAGACAGCGCC
6._EET_54_[ECU]___
AGAAAGAGAAGGAGACACAGACAGCGCC
7._EET_67_[ECU]___
AGAAAGAGAAGGAGACACAGACAGCGCC
8._JA_1_/19_[POU]___
AGAGAGAGAAGGAGACACAGACAGCGCC
9._EET_64_[ECU]___
AGAGAGGGAAGGAGACACAGACAGCGCC
10._UF_36___
AGAGAGAGAAGGAGACACAGACAGCGCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAGAGAACCAGAAAAAAAAACCGAG
1._UF_666___
GGGGAAAGAACCAGAAAAAAAAACCGAG
2._UF_705___
GGGGAAAGAACCAGAAAAAAAAACCGAG
3._SCR_2___
GGGGAGAGAACCAGAAAAAAAAACCGAG
4._JA_5_/5_[POU]___
GGAGAAAGAAACAGAAAAAAAAACCGAA
5._EET_103_[ECU]___
GGGGAAAGAAACAGAAAAAAAACCCGAG
6._EET_54_[ECU]___
GGAGAAAGAACCAGAAAAAAAAACCGAG
7._EET_67_[ECU]___
GGAGAAAGAACCAGAAAAAAAAACCGAG
8._JA_1_/19_[POU]___
GGAGAGAGAGCCAGAAAAAAAACCCGAG
9._EET_64_[ECU]___
GGAGAAAGAACCAGAAAAAAAAACCGAG
10._UF_36___
GGAGAAAGAAACAGAAAAAAAAACCGAG
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
1._UF_666___
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
2._UF_705___
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
3._SCR_2___
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
4._JA_5_/5_[POU]___
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
5._EET_103_[ECU]___
CCAGCGAGCCAAGGAGATAAAGX_XX_XX_X
6._EET_54_[ECU]___
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
7._EET_67_[ECU]___
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
8._JA_1_/19_[POU]___
CCAGCGAGCCAGGGGGATAAAAX_XX_XX_X
9._EET_64_[ECU]___
CCAGCGAGACAGGGAGATAAAGX_XX_XX_X
10._UF_36___
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X

Input profile: UF_29 UF_29_Fld#_20_Plt#_5

 
USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

1._UF_666 UF_666_Fld#_71_Plt#_5

98.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 71, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._UF_705 UF_705_Fld#_76_Plt#_5

98.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 76, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

3._SCR_2 SCR_2_Fld#_112_Plt#_2

98.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 112, Tree: 2
 Mars, 2018

4._JA_5_/5_[POU] RUQ_1539

93.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._EET_103_[ECU] EET_103_[ECU]_Fld#_124_Plt#_6

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 124, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

6._EET_54_[ECU] EET_54_[ECU]_Fld#_139_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 139, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

7._EET_67_[ECU] EET_67_[ECU]_Fld#_67_Plt#_5

92.6 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 67, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._JA_1_/19_[POU] RUQ_352

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._EET_64_[ECU] EET_64_[ECU]_Fld#_34_Plt#_6

92 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 34, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

10._UF_36 UF_36_Fld#_106_Plt#_5

92 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 106, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998