SNP Profiles matching EET 64 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGAGCCATAGAGAGAAAC
1._UF_666___
ACACAGACAAGGAGCCATAGAGAGAAAC
2._UF_29___
ACACAGACAAGGAGCCATAGAGAGAAAC
3._SCR_2___
ACACAGACAAGGAGCCAAAGAGAGAAAC
4._EET_103_[ECU]___
ACCCAGACAAGGAGCCATAGAGAGAAAC
5._JA_5_/5_[POU]___
ACACAGACAAGGAGCCATAGAGAGAGAC
6._EET_64_[ECU]___
ACACAGACAAGGAGACATAGAGAGAAAC
7._UF_36___
ACACAGAAAAGGAGCCATAGGGAGAAAC
8._EET_54_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
9._EET_67_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
10._JA_1_/19_[POU]___
AAACAGAAAAGGAGCCATAGAGAGAAAC
11._CC_49___
ACACAGAAAAGGAGCCATAGAGAGAAAC
12._EET_40_[ECU]___
ACACAGAAAAGGAGCCATAGAGAGAAAC
13._EET_40_[ECU]___
ACACAGAAAAGGAGCCATAGAGAGAAAC
14._EET_59_[ECU]___
ACACAGAAAAGGAGACATAGAGAGAAAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAGAAACGGAGAGCCAGCGAGACAG
1._UF_666___
AAACAGAAACGGAGAGCCAGCGAGACAG
2._UF_29___
AAACAGAA__GGAGAGCCAGCGAGACAG
3._SCR_2___
AAACAGAGACGGAGAGCCAGCGAGACAG
4._EET_103_[ECU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
5._JA_5_/5_[POU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
6._EET_64_[ECU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
7._UF_36___
AGACAGAGACGGAGAGCCAGCGAGCCAG
8._EET_54_[ECU]___
AGACAGAAACGGAGAGCCAGCGAGACAG
9._EET_67_[ECU]___
AGACAGAAACGGAGAGCCAGCGAGACAG
10._JA_1_/19_[POU]___
AGACAGAGACGGAGAGCCAGCGAGACAG
11._CC_49___
AAAAGGAAACGGAAAGCCGGCGAAACAG
12._EET_40_[ECU]___
AAAAGGAAACGGAAAGCCGGCGAAACAG
13._EET_40_[ECU]___
AAAAGGAAACGGAAAGCCGGCGAAACAG
14._EET_59_[ECU]___
AGACAGAGACGGAGGGCCAGCGAGACAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATGGACGGAAGGGGCGCCATATGGGG
1._UF_666___
AGATGGACGGAAGGGGCGCCATATGGGG
2._UF_29___
AGATGGACGGAAGGGGCGCCATATGGAG
3._SCR_2___
AGTTGGACGGAAGGGGCGCCATATGGAG
4._EET_103_[ECU]___
AGATGGACGGAAGGGGCGCCATATGGGG
5._JA_5_/5_[POU]___
AGTTGGACGGAAGGGGCGCCATATAGAG
6._EET_64_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGGG
7._UF_36___
AGATAGACGGAAGGAGCGCCATATGGGG
8._EET_54_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGAG
9._EET_67_[ECU]___
AGTTGGACCGAAGGGGCGCCATATGGAG
10._JA_1_/19_[POU]___
AGTTGGACGGAAGGGGCGCCATATAGGG
11._CC_49___
AGATGGACGGAAGGGGGGCCATATGGGG
12._EET_40_[ECU]___
AGATGGACGGAAGGGGGGCCATATGGGG
13._EET_40_[ECU]___
AGATGGACGGAAGGGGGGCCATATGGGG
14._EET_59_[ECU]___
AGTTGGCCCGAAGGGGCGCCATATGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGAGATGGAGACACAGACAGCG
1._UF_666___
ATAGAGAGAGATGGAGACACAGACAGCG
2._UF_29___
ATAGAGAGAGATGGAGACACAGACAGCG
3._SCR_2___
ATAGAGAGAGATGGAGACACAGACAGCG
4._EET_103_[ECU]___
ATAGAGAGGGAAGGAGACACAGACAGCG
5._JA_5_/5_[POU]___
ATAGAGAGAGAAGGAGACACAGACAGCG
6._EET_64_[ECU]___
ATAGAGAGGGAAGGAGACACAGACAGCG
7._UF_36___
ATAGAGAGAGAAGGAGACACAGACAGCG
8._EET_54_[ECU]___
ATAGAAAGAGAAGGAGACACAGACAGCG
9._EET_67_[ECU]___
ATAGAAAGAGAAGGAGACACAGACAGCG
10._JA_1_/19_[POU]___
ATAGAGAGAGAAGGAGACACAGACAGCG
11._CC_49___
ATAGGGAGAGTTGGAACCACAGACAACG
12._EET_40_[ECU]___
ATAGGGAGAGTTGGAACCACAGACAACG
13._EET_40_[ECU]___
ATAGGGAGAGTTGGAACCACAGACAACG
14._EET_59_[ECU]___
ATAGAAAGGGAAGGAGACACAGACAGCG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGAAAGAACCAGAAAAAAAAACCG
1._UF_666___
ACGGGGAAAGAACCAGAAAAAAAAACCG
2._UF_29___
ACGGGGAGAGAACCAGAAAAAAAAACCG
3._SCR_2___
ACGGGGAGAGAACCAGAAAAAAAAACCG
4._EET_103_[ECU]___
CCGGGGAAAGAAACAGAAAAAAAACCCG
5._JA_5_/5_[POU]___
CCGGAGAAAGAAACAGAAAAAAAAACCG
6._EET_64_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
7._UF_36___
CCGGAGAAAGAAACAGAAAAAAAAACCG
8._EET_54_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
9._EET_67_[ECU]___
CCGGAGAAAGAACCAGAAAAAAAAACCG
10._JA_1_/19_[POU]___
CCGGAGAGAGAGCCAGAAAAAAAACCCG
11._CC_49___
ACGGGGAAAGAACCAGAAAAAAAAACCG
12._EET_40_[ECU]___
ACGGGGAAAGAACCAGAAAAAAAAACCG
13._EET_40_[ECU]___
ACGGGGAAAGAACCAGAAAAAAAAACCG
14._EET_59_[ECU]___
CCGGAGAAAAAACCAGAAAAAAAAACCG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
1._UF_666___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
2._UF_29___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
3._SCR_2___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
4._EET_103_[ECU]___
AGCCAGCGAGCCAAGGAGATAAAGX_XX_X
5._JA_5_/5_[POU]___
AACCAGCGAGCCAGGGGGATAAAGX_XX_X
6._EET_64_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
7._UF_36___
AGCCAGCGAGCCAGGGGGATAAAGX_XX_X
8._EET_54_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
9._EET_67_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X
10._JA_1_/19_[POU]___
AGCCAGCGAGCCAGGGGGATAAAAX_XX_X
11._CC_49___
GGCCGGGGAGCCAGGGGGATAAAGX_XX_X
12._EET_40_[ECU]___
GGCCGGGGAGCCAGGGGGATAAAGX_XX_X
13._EET_40_[ECU]___
GGCCGGGGAGCCAGGGGGATAAAGX_XX_X
14._EET_59_[ECU]___
AGCCAGCGAGACAGGGAGATAAAGX_XX_X

Input profile: UF_705 UF_705_Fld#_76_Plt#_5

 
USDA-TARS, United States of America
Location: Field: 76, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

1._UF_666 UF_666_Fld#_71_Plt#_5

identical
82 shared markers

USDA-TARS, United States of America
Location: Field: 71, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._UF_29 UF_29_Fld#_20_Plt#_5

98.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

3._SCR_2 SCR_2_Fld#_112_Plt#_2

97 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 112, Tree: 2
 Mars, 2018

4._EET_103_[ECU] EET_103_[ECU]_Fld#_124_Plt#_6

93.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 124, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

5._JA_5_/5_[POU] RUQ_1539

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._EET_64_[ECU] EET_64_[ECU]_Fld#_34_Plt#_6

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 34, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

7._UF_36 UF_36_Fld#_106_Plt#_5

93.3 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 106, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._EET_54_[ECU] EET_54_[ECU]_Fld#_139_Plt#_5

92.7 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 139, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

9._EET_67_[ECU] EET_67_[ECU]_Fld#_67_Plt#_5

92.7 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 67, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

10._JA_1_/19_[POU] RUQ_352

92.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._CC_49 CC_49_Fld#_126_Plt#_5

90.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 126, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

12._EET_40_[ECU] EET_40_[ECU]_Fld#_63_Plt#_6

90.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 63, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

13._EET_40_[ECU] EET_40_[ECU]_Fld#_63A_Plt#_1

90.9 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 63A, Tree: 1
 Mars, 2018

14._EET_59_[ECU] RUQ_791

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998