SNP Profiles matching MAR 9

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTCCCCTTCCGGAACCAACCGGGGAACC
1._MAR_1
____CCTTCC__AA__AACC____AA__
2._MAR_20
____CCTTCC__AA__AACC____AA__
3._RUQ_553
TTCCCCTTCCGGAACCAA__GGGGAA__
4._RUQ_554
TTCCCCTTCCGGAACCAACCGGGGAACC
5._RUQ_683
TTCCCCTTCCAGAACCAACCGGGGAACC
6._RUQ_549
TTACCCTTCCAGAACCAACCGGGG__CC
7._RUQ_678
TTCCCCTTCCGGAACCAACCGGGGAACC
8._BE_10
____CCTTCC__AACCAACC____AA__
9._BE_10
____CCTTCC__AACCAACC____AA__
10._BE_10
____CCTTCC__AACCAACC____AA__
11._BE_10
____CCTTCC__AACCAACC____AA__
12._BE_10
____CCTTCC__AACCAACC____AA__
13._BE_10
____CCTTCC__AACCAACC____AA__
14._BE_10
____CCTTCC__AACCAACC____AA__
15._BE_10
____CCTTCC__AACCAACC____AA__
16._BE_10
____CCTTCC__AACCAACC____AA__
17._BE_10
____CCTTCC__AACCAACC____AA__
18._GU_207_/H
____CCTTCC__AACCAACC____AA__
19._GU_207_/H
____CCTTCC__AACCAACC____AA__
20._GU_207_/H
____CCTTCC__AACCAACC____AA__
21._GU_207_/H
____CCTTCC__AACCAACC____AA__
22._GU_207_/H
____CCTTCC__AACCAACC____AA__
23._GU_207_/H
____CCTTCC__AACCAACC____AA__
24._GU_207_/H
____CCTTCC__AACCAACC____AA__
25._GU_207_/H
____CCTTCC__AACCAACC____AA__
26._JA_9_/37_[POU]
____CCTTCC__AACCAACC____AA__
27._JA_9_/37_[POU]
____CCTTCC__AACCAACC____AA__
28._JA_9_/37_[POU]
____CCTTCC__AACCAACC____AA__
29._JA_9_/37_[POU]
____CCTTCC__AACCAACC____AA__
30._AMAZ_5_/2
____CCTTCC__AACCAACC____AA__
31._LCT_EEN_90_/S-7
____CCTTCC__AA__AACC____AA__
32._GC-08-110-3-09
TTCCCCTTCCGGAACCAACCGGGGAACC
33._RUQ_673
TTCCCCTTCCGGAACCAACCGGGGAACC
34._BE_10
____CCTT____AACCAACC____AA__
35._BE_10
____CCTTCC__AACCAACC____AA__
36._GU_207_/H
______TTCC__AACCAACC____AA__
37._GU_207_/H
____CCTTCC____CCAACC____AA__
38._BE_10
____CCTTCC__AACCAA______AA__
39._SIAL_70
____CCTT____AACCAACC____AA__
40._GC-08-071-1-93
TTCCCCTTCCGGAACCAACCGGGGAACC
41._GC-08-071-1-93
TTCCCCTTCCGGAACCAACCGGGGAACC
42._GC-08-071-1-93
TTCCCCTTCCGGAACCAACCGGGGAACC
43._GC-08-071-1-93
TTCCCCTTCCGGAACCAACCGGGGAACC
44._RUQ_436
TTCCCCTTCCGGAACCAACCGGGGAACC
45._RUQ_648
TTCCAATTCCGGAACCAACCGGGGAACC
46._RUQ_1325
TTCCCCTTCCGGAACCAACCGGGGAACC
47._RUQ_843
TTCCCCTTCCGGAACCAACCGGGGAACC
48._RUQ_44
TTCCCCTTCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTTTGGAACCTTTTGGGGTTAAGG
1._MAR_1
AACCTTTTGGAA__TT__________GG
2._MAR_20
AACCTTTTGGAA__TT__________GG
3._RUQ_553
__CCTT__GGAATTTTTTGG__TT____
4._RUQ_554
AACCTTTTGGAACCCCTTGGGGTTCCGG
5._RUQ_683
AACC__TTGGAACCTTTTGGGGTTCCCG
6._RUQ_549
AACC__TTGGAACCTTTTGGGGTTACGG
7._RUQ_678
AACCTTTTGGCCTTTTTTGGGGTTCCGG
8._BE_10
AACCTTTTCCAA__TT__GG______GG
9._BE_10
AACCTTTTCCAA__TT__GG______GG
10._BE_10
AACCTTTTCCAA__TT__GG______GG
11._BE_10
AACCTTTTCCAA__TT__GG______GG
12._BE_10
AACCTTTTCCAA__TT__GG______GG
13._BE_10
AACCTTTTCCAA__TT__GG______GG
14._BE_10
AACCTTTTCCAA__TT__GG______GG
15._BE_10
AACCTTTTCCAA__TT__GG______GG
16._BE_10
AACCTTTTCCAA__TT__GG______GG
17._BE_10
AACCTTTTCCAA__TT__GG______GG
18._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
19._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
20._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
21._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
22._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
23._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
24._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
25._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
26._JA_9_/37_[POU]
AACCTTTTCCAA__TT__GG______GG
27._JA_9_/37_[POU]
AACCTTTTCCAA__TT__GG______GG
28._JA_9_/37_[POU]
AACCTTTTCCAA__TT__GG______GG
29._JA_9_/37_[POU]
AACCTTTTCCAA__TT__GG______GG
30._AMAZ_5_/2
AACCTTTTCCAA__TT__GG______GG
31._LCT_EEN_90_/S-7
AACCTTTTCCAA__TT__GG______GG
32._GC-08-110-3-09
AACCTTTTCGAATTTTCCGGGGTTAAGG
33._RUQ_673
AACCTTTTGGCCCCCTTTGGGGTTACGG
34._BE_10
AACCTTTTCCAA__TT__GG______GG
35._BE_10
AACCTTTTCCAA__TT__GG______GG
36._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
37._GU_207_/H
AACCTTTTCCAA__TT__GG______GG
38._BE_10
AA__TTTTCCAA__TT__GG______GG
39._SIAL_70
AACC__TTCC____TT__GG______GG
40._GC-08-071-1-93
AACCTTTTCCAATTTTCCGGGGTTAAGG
41._GC-08-071-1-93
AACCTTTTCCAATTTTCCGGGGTTAAGG
42._GC-08-071-1-93
AACCTTTTCCAATTTTCCGGGGTTAAGG
43._GC-08-071-1-93
AACCTTTTCCAATTTTCCGGGGTTAAGG
44._RUQ_436
AACCTTTTCCAATTTTTTGGGGTTAAGG
45._RUQ_648
AACCTTTTGGAACCCCTTGGGGTTCCGG
46._RUQ_1325
AACCTTTTCCAACCCCTTGGGGTTAAGG
47._RUQ_843
AACC__TTCCAACCCCTTGGGGTTAAGG
48._RUQ_44
AACC__TTCCAATTTTTTGGGGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAATTCCGGAATTTTTTTTCCGGAA
1._MAR_1
CCCCAA__CC______TT____CCGGAA
2._MAR_20
CCCCAA__CC______TT____CCGGAA
3._RUQ_553
CCCCAA__CCGG__TTTTTT____GGAA
4._RUQ_554
CCCCAATTCCGGAATTTTTTTTCCGGAA
5._RUQ_683
CCCCAATTCCGGAATTTTTTTTCCGGAA
6._RUQ_549
CCCCAATTCCGGAATTTTCTTTCCGGAA
7._RUQ_678
CCCCAATTCCGGAATTTTTTTTCCGGAA
8._BE_10
__CCGG__CC______TT____CCGGAA
9._BE_10
__CCGG__CC______TT____CCGGAA
10._BE_10
__CCGG__CC______TT____CCGGAA
11._BE_10
__CCGG__CC______TT____CCGGAA
12._BE_10
__CCGG__CC______TT____CCGGAA
13._BE_10
__CCGG__CC______TT____CCGGAA
14._BE_10
__CCGG__CC______TT____CCGGAA
15._BE_10
__CCGG__CC______TT____CCGGAA
16._BE_10
__CCGG__CC______TT____CCGGAA
17._BE_10
__CCGG__CC______TT____CCGGAA
18._GU_207_/H
__CCGG__CC______TT____CCGGAA
19._GU_207_/H
__CCGG__CC______TT____CCGGAA
20._GU_207_/H
__CCGG__CC______TT____CCGGAA
21._GU_207_/H
__CCGG__CC______TT____CCGGAA
22._GU_207_/H
__CCGG__CC______TT____CCGGAA
23._GU_207_/H
__CCGG__CC______TT____CCGGAA
24._GU_207_/H
__CCGG__CC______TT____CCGGAA
25._GU_207_/H
__CCGG__CC______TT____CCGGAA
26._JA_9_/37_[POU]
__CCGG__CC______TT____CCGGAA
27._JA_9_/37_[POU]
__CCGG__CC______TT____CCGGAA
28._JA_9_/37_[POU]
__CCGG__CC______TT____CCGGAA
29._JA_9_/37_[POU]
__CCGG__CC______TT____CCGGAA
30._AMAZ_5_/2
__CCGG__CC______TT____CCGGAA
31._LCT_EEN_90_/S-7
CCCCGG__CC______TT____CCGGAA
32._GC-08-110-3-09
CCCCGGTTCCGGAATTTTTTTTCCGGAA
33._RUQ_673
CGCCAGTTCCGGAATTTTTTTTCCGGAG
34._BE_10
__CCGG__CC______TT____CCGGAA
35._BE_10
__CCGG__CC____________CCGGAA
36._GU_207_/H
__CCGG__CC______TT____CCGGAA
37._GU_207_/H
__CCGG__CC______TT____CCGGAA
38._BE_10
__CCGG__CC______TT____CCGGAA
39._SIAL_70
__CCGG__CC______TT____CCGGAA
40._GC-08-071-1-93
CCCCGGTTCCGGAATTTTTTTTCCGGAA
41._GC-08-071-1-93
CCCCGGTTCCGGAATTTTTTTTCCGGAA
42._GC-08-071-1-93
CCCCGGTTCCGGAATTTTTTTTCCGGAA
43._GC-08-071-1-93
CCCCGGTTCCGGAATTTTTTTTCCGGAA
44._RUQ_436
CCCCGGTTCCGGGGTTTTTTTTCCGGAA
45._RUQ_648
CCCCAATTCCGGGGTTTTTTTTCCGGAA
46._RUQ_1325
CCCCGGTTCCGGAATTTTCCTTCCGGAA
47._RUQ_843
CCCCGGTTCCGGAATTTTCCTTCCGGAA
48._RUQ_44
CCCCGGTTCCGGGGTTTTTTTTCCGGAA

Input profile: MAR_9 RUQ_557

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._GDL_3 RUQ_553

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._GDL_7 RUQ_554

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GS_13 RUQ_683

95.1 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._DOM_30 RUQ_549

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._LCT_EEN_62_/S-4 RUQ_678

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

9._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

10._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

11._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

12._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

13._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

14._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

15._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

16._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

17._BE_10

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 6 > FP
 Dapeng Zhang, 2016

19._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 12 > F
 Dapeng Zhang, 2016

20._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 1 > FP
 Dapeng Zhang, 2016

21._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 11
 Dapeng Zhang, 2016

22._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 10
 Dapeng Zhang, 2016

23._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 9
 Dapeng Zhang, 2016

24._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 7
 Dapeng Zhang, 2016

25._GU_207_/H

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 4
 Dapeng Zhang, 2016

26._JA_9_/37_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

27._JA_9_/37_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

28._JA_9_/37_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

29._JA_9_/37_[POU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

30._AMAZ_5_/2

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

31._LCT_EEN_90_/S-7

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

32._PH_9_[BRA] GC-08-110-3-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._DOM_25 RUQ_673

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

34._BE_10

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

35._BE_10

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

36._GU_207_/H

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 13
 Dapeng Zhang, 2016

37._GU_207_/H

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1311 2
 Dapeng Zhang, 2016

38._BE_10

90.9 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

39._SIAL_70

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8353 1
 Dapeng Zhang, 2016

40._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

41._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

42._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

43._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

44._B_12_/2_[POU] RUQ_436

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._GF_32 RUQ_648

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

46._SPEC_41_/6-18 RUQ_1325

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

47._APA_4 RUQ_843

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

48._SC_9_[UNK] RUQ_44

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484