SNP Profiles matching EET 233

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCTTCTGGACGGAGCTGGGGAACC
1._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGGAACC
2._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
3._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
4._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
5._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
6._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
7._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
8._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
9._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
10._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
11._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
12._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
13._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
14._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
15._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
16._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
17._EET_233_[ECU]___
____CCGTCT__ACCGAGCT____AA__
18._IMC_67___
____CCGTCT__ACCGAGCT____AA__
19._IMC_67___
____CCGTCT__ACCGAGCT____AA__
20._IMC_67___
____CCGTCT__ACCGAGCT____AA__
21._IMC_67___
____CCGTCT__ACCGAGCT____AA__
22._IMC_67___
____CCGTCT__ACCGAGCT____AA__
23._IMC_67___
____CCGTCT__ACCGAGCT____AA__
24._IMC_67___
____CCGTCT__ACCGAGCT____AA__
25._NA_26___
____CCTTCT__ACGGAGCT____AT__
26._IMC_47___
TTCCCCTTCTGGACCGAGCTGGGGATCC
27._IMC_57___
TTCCCCTTCTGGACCGAGCTGGGGATCC
28._IMC_67___
____CCGTCT__ACCGAGCT________
29._IMC_67___
____CCGTCT__ACCGAGCT________
30._IMC_2___
TTCCCCTTCTGGACCCAGCTAGGGATCC
31._IMC_31___
TTCCACTTCTGGACCGAGCTAGGGAACC
32._LP_4_/20_[POU]___
TTCCCCTTCTGGACGGAGCTAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCGTCGACCTCCTTGGGGTTACCC
1._IMC_67___
AAACCCGTCGACCCCCTTGGGGTTCCCC
2._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
3._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
4._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
5._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
6._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
7._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
8._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
9._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
10._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
11._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
12._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
13._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
14._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
15._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
16._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
17._EET_233_[ECU]___
AAACCCGTGGAC__CC__GG______CC
18._IMC_67___
AAACCCGTGGAC__CC__GG______CC
19._IMC_67___
AAACCCGTGGAC__CC__GG______CC
20._IMC_67___
AAACCCGTGGAC__CC__GG______CC
21._IMC_67___
AAACCCGTGGAC__CC__GG______CC
22._IMC_67___
AAACCCGTGGAC__CC__GG______CC
23._IMC_67___
AAACCCGTGGAC__CC__GG______CC
24._IMC_67___
AAACCCGTGGAC__CC__GG______CC
25._NA_26___
AAACCCGGGGAC__CC__GG______CC
26._IMC_47___
AAACCCGGCGACCCCCTTGGAGTTACCC
27._IMC_57___
AAACCCGGCGACCCCCTTGGAGTTACCC
28._IMC_67___
AAACCCGTGGAC__CC__GG______CC
29._IMC_67___
AAACCCGTGGAC__CC__GG______CC
30._IMC_2___
AGACCCGTCGACCTCCTTGTGGTTACCC
31._IMC_31___
AAACCCGTCGACCCCCTTGGGGTTACCC
32._LP_4_/20_[POU]___
AACCCTGTGGAACCCCTTGGGGTTACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTAACCCCGGGGTTGTTTCCTTGGAG
1._IMC_67___
CCTTAACCCCGGGGTTGTTTCCTTGGAG
2._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
3._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
4._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
5._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
6._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
7._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
8._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
9._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
10._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
11._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
12._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
13._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
14._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
15._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
16._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
17._EET_233_[ECU]___
__CTAA__CC______GT____TTGGAG
18._IMC_67___
__CTAA__CC______GT____TTGGAG
19._IMC_67___
__CTAA__CC______GT____TTGGAG
20._IMC_67___
__CTAA__CC______GT____TTGGAG
21._IMC_67___
__CTAA__CC______GT____TTGGAG
22._IMC_67___
__CTAA__CC______GT____TTGGAG
23._IMC_67___
__CTAA__CC______GT____TTGGAG
24._IMC_67___
__CTAA__CC______GT____TTGGAG
25._NA_26___
__TTAA__CC______GT____TTCGAG
26._IMC_47___
CCTTAACCCCGGGGTTGTCTCCTTCGAG
27._IMC_57___
CCTTAACCCCGGGGTTGTCTCCTTCGAG
28._IMC_67___
__CTAA__CC______GT____TTGGAG
29._IMC_67___
__CTAA__CC______GT____TTGGAG
30._IMC_2___
CCTTAACCCCGGGGTTTTCTCCTTGGAG
31._IMC_31___
CCCCAACCCTGGGGTTGTCTCCTTGGAG
32._LP_4_/20_[POU]___
CCTTAACCCCGGGGTTGGTTCCTTCGAG

Input profile: IMC_50 RUQ_1590

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_67 RUQ_1056

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 4
 Dapeng Zhang, 2016

3._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 3
 Dapeng Zhang, 2016

4._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5227 1 > FP
 Dapeng Zhang, 2016

5._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5227 5
 Dapeng Zhang, 2016

6._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5227 4
 Dapeng Zhang, 2016

7._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5227 3
 Dapeng Zhang, 2016

8._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5227 2
 Dapeng Zhang, 2016

9._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5336 3 > FP
 Dapeng Zhang, 2016

10._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5336 1 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5336 5
 Dapeng Zhang, 2016

12._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5336 4
 Dapeng Zhang, 2016

13._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5132 4 > FP
 Dapeng Zhang, 2016

14._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5132 1 > FP
 Dapeng Zhang, 2016

15._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5132 5
 Dapeng Zhang, 2016

16._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5132 3
 Dapeng Zhang, 2016

17._EET_233_[ECU]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5132 2
 Dapeng Zhang, 2016

18._IMC_67

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

19._IMC_67

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

20._IMC_67

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

21._IMC_67

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._IMC_67

91.7 %
24 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

23._IMC_67

91.7 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

24._IMC_67

91.7 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

25._NA_26

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

26._IMC_47 RUQ_849

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._IMC_57 RUQ_1055

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_67

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

29._IMC_67

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

30._IMC_2 RUQ_828

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._IMC_31 RUQ_1449

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._LP_4_/20_[POU] RUQ_1676

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484