SNP Profiles matching UF 667

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGTCTGGAACCGGCCGGGGAACC
1._PA_121_[PER]___
TTCCACGT__GGAACCAACCGGGGAACC
2._PA_121_[PER]___
TTCCACGTCCGGAACCAACCGGGGAACC
3._PA_121_[PER]___
TTCCACGTCCGGAACCAACCGGGGAACC
4._PA_121_[PER]___
TTCCACGTCCGGAACCAACCGGGGAACC
5._PA_121_[PER]___
____ACGT____AACCAACC____AA__
6._PA_46_[PER]___
____ACGGCC__AA__GGCC____AA__
7._PA_299_[PER]___
TTCCACGGCCGGAACCGGCCGGGGAACC
8._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
9._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
10._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
11._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
12._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
13._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
14._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
15._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
16._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
17._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
18._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
19._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
20._ICS_1___
____ACGTCC__AACCAACC____AA__
21._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
22._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
23._UF_667___
____ACGTCT__AACCAGCC____AA__
24._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
25._PA_293_[PER]___
____ACGTCC__AACCGGCC____AA__
26._PA_293_[PER]___
____ACGTCC__AACCGGCC____AA__
27._PA_121_[PER]___
____ACGTCC__AA__AACC____AA__
28._PA_207_[PER]___
____ACGTCT__AA__AGCC____AA__
29._SLA_16___
TTCCACGGCTGGACCCAGCCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAACTGGCGCCTTTTCCGGAGTTAAGG
1._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
2._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
3._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
4._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
5._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
6._PA_46_[PER]___
AAAACTGGCGAC__TT__________GG
7._PA_299_[PER]___
AAACCTGGCGCCTTTTCTGGAGTTAAGG
8._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
9._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
10._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
11._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
12._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
13._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
19._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
20._ICS_1___
AGAACTGGCGCC__TT__GG______GG
21._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
22._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
23._UF_667___
AGAACCGGCGCC__TT__GG______GG
24._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
25._PA_293_[PER]___
AAAACTGTCGAC__TT__________GG
26._PA_293_[PER]___
AAAACTGTCGAC__TT__________GG
27._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
28._PA_207_[PER]___
AAACTTGGCGAC__TT__________GG
29._SLA_16___
AAACCTGGCGCCCTTTCCGGAATTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
1._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
2._PA_121_[PER]___
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
3._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
4._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
5._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
6._PA_46_[PER]___
CCCCAG__CC______TT____CTGGGG
7._PA_299_[PER]___
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
8._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
9._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
10._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
11._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
12._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
13._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
14._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
15._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
16._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
17._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
18._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
19._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
20._ICS_1___
__CCAG__CC______TT____CTGGGG
21._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
22._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
23._UF_667___
__CCAG__CC______TT____CTCGGG
24._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
25._PA_293_[PER]___
CCCCAG__CC______TT____CTCGGG
26._PA_293_[PER]___
CCCCAG__CC______TT____CTCGGG
27._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
28._PA_207_[PER]___
CCCCAG__CC______TT____CTGGGG
29._SLA_16___
CCCCAGCCCCGGGGTTTTCTCCCTGGGG

Input profile: PA_289_[PER] RUQ_952

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_121_[PER] GC-05-011-1-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

2._PA_121_[PER] RUQ_1059

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_121_[PER] GC-05-011-1-11

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._PA_121_[PER] GC-05-011-1-11

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._PA_121_[PER]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

6._PA_46_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

7._PA_299_[PER] RUQ_1621

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._PA_121_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

19._PA_121_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

20._ICS_1

91.7 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

21._PA_121_[PER] RUQ_1059

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_121_[PER]

91.7 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

23._UF_667

91.7 %
24 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

24._PA_121_[PER]

91.7 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

25._PA_293_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 817
 Dapeng Zhang, 2014

26._PA_293_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 762
 Dapeng Zhang, 2014

27._PA_121_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

28._PA_207_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 731
 Dapeng Zhang, 2014

29._SLA_16 RUQ_1092

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484