SNP Profiles matching SCA 11

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGTTGGCCCGAGCTAAGGAAGG
1._SCA_11___
____ACGGTT__CCCGAGCT____AA__
2._SCA_11___
____ACGGTT__CCCGAGCT____AA__
3._SCA_3___
____ACGGTT__CCCGAACT____AA__
4._SCA_3___
____ACGGTT__CCCGAACT____AA__
5._SCA_3___
____ACGGTT__CCCGAACT____AA__
6._SCA_3___
____ACGGTT__CCCGAACT____AA__
7._SCA_3___
____ACGGTT__CCCGAACT____AA__
8._SCA_3___
____ACGGTT__CCCGAACT____AA__
9._SCA_3___
____ACGGTT__CCCGAACT____AA__
10._SCA_3___
____ACGGTT__CCCGAACT____AA__
11._SCA_3___
____ACGGTT__CCCGAACT____AA__
12._SCA_5___
____ACGGTT__CCCCGGCT____AA__
13._SCA_5___
____ACGGTT__CCCCGGCT____AA__
14._SCA_5___
____ACGGTT__CCCCGGCT____AA__
15._SCA_5___
____ACGGTT__CCCCGGCT____AA__
16._SCA_5___
____ACGGTT__CCCCGGCT____AA__
17._SCA_5___
____ACGGTT__CCCCGGCT____AA__
18._SCA_5___
____ACGGTT__CCCCGGCT____AA__
19._SCA_5___
____ACGGTT__CCCCGGCT____AA__
20._SCA_5___
____ACGGTT__CCCCGGCT____AA__
21._SCA_5___
____ACGGTT__CCCCGGCT____AA__
22._SCA_5___
____ACGGTT__CCCCGGCT____AA__
23._SCA_5___
____ACGGTT__CCCCGGCT____AA__
24._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
25._SCA_5___
____ACGGTT__CCCCGGCT____AA__
26._SCA_3___
____ACGGTT__CC__AACT____AA__
27._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
28._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
29._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
30._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
31._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
32._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
33._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
34._SCA_3___
TTCCACGGTTGGCCCGAACTAAGGAAGG
35._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
36._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
37._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
38._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
39._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
40._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
41._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
42._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
43._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
44._SCA_19___
TTCCCCGGTTGGCCCCAACTAAGGAAGG
45._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
46._SCA_5___
TTCCACGGTTGGCCCCGGCT__GGAAGG
47._SCA_5___
TTCCACGGTTGGCCCCGGCTAAGGAAGG
48._SCA_19___
TTCCACGGTTGGCCCCAACTAAGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCCCCCTTCCGGAATTCCCC
1._SCA_11___
GGAACCGGCCCC__TT__GG______CC
2._SCA_11___
GGAACCGGCCCC__TT__GG______CC
3._SCA_3___
GGAACCGGCCCC__TT__GG______CC
4._SCA_3___
GGAACCGGCCCC__TT__GG______CC
5._SCA_3___
GGAACCGGCCCC__TT__GG______CC
6._SCA_3___
GGAACCGGCCCC__TT__GG______CC
7._SCA_3___
GGAACCGGCCCC__TT__GG______CC
8._SCA_3___
GGAACCGGCCCC__TT__GG______CC
9._SCA_3___
GGAACCGGCCCC__TT__GG______CC
10._SCA_3___
GGAACCGGCCCC__TT__GG______CC
11._SCA_3___
GGAACCGGCCCC__TT__GG______CC
12._SCA_5___
GGAACCGGCCCC__TT__GG______CC
13._SCA_5___
GGAACCGGCCCC__TT__GG______CC
14._SCA_5___
GGAACCGGCCCC__TT__GG______CC
15._SCA_5___
GGAACCGGCCCC__TT__GG______CC
16._SCA_5___
GGAACCGGCCCC__TT__GG______CC
17._SCA_5___
GGAACCGGCCCC__TT__GG______CC
18._SCA_5___
GGAACCGGCCCC__TT__GG______CC
19._SCA_5___
GGAACCGGCCCC__TT__GG______CC
20._SCA_5___
GGAACCGGCCCC__TT__GG______CC
21._SCA_5___
GGAACCGGCCCC__TT__GG______CC
22._SCA_5___
GGAACCGGCCCC__TT__GG______CC
23._SCA_5___
GGAACCGGCCCC__TT__GG______CC
24._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
25._SCA_5___
GG__CCGGCCCC__TT__GG______CC
26._SCA_3___
GGAACCGGCCCC__TT__GG______CC
27._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
28._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
29._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
30._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
31._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
32._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
33._SCA_3___
GGAACCGGCCCCCCTTTTGGAATTCCCC
34._SCA_3___
GGAACCGGCCCCCCTTTTGGAA__CCCC
35._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
36._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
37._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
38._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
39._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
40._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
41._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
42._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
43._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
44._SCA_19___
GGAACCGGCCCCCCTTCTGGAATTCCCC
45._SCA_5___
GGAACCGGCCCCCCTTTTGGAA__CCCC
46._SCA_5___
GGAACCGGCCCCCCTTTTGGAATTCCCC
47._SCA_5___
GG__CCGGCCCCCCTTTTGGAATTCCCC
48._SCA_19___
GGAACCGGCCCCCCTTTTGGAATTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTAACCCCGGAGTTGTCCCCTTCCAA
1._SCA_11___
__TTAA__CC______GT____TTCCAA
2._SCA_11___
__TTAA__CC______GT____TTCCAG
3._SCA_3___
__TTAA__CC______GT____CTCCAA
4._SCA_3___
__TTAA__CC______GT____CTCCAA
5._SCA_3___
__TTAA__CC______GT____CTCCAA
6._SCA_3___
__TTAA__CC______GT____CTCCAA
7._SCA_3___
__TTAA__CC______GT____CTCCAA
8._SCA_3___
__TTAA__CC______GT____CTCCAA
9._SCA_3___
__TTAA__CC______GT____CTCCAA
10._SCA_3___
__TTAA__CC______GT____CTCCAA
11._SCA_3___
__TTAA__CC______GT____CTCCAA
12._SCA_5___
__TTAA__CC______GT____TTCCAA
13._SCA_5___
__TTAA__CC______GT____TTCCAA
14._SCA_5___
__TTAA__CC______GT____TTCCAA
15._SCA_5___
__TTAA__CC______GT____TTCCAA
16._SCA_5___
__TTAA__CC______GT____TTCCAA
17._SCA_5___
__TTAA__CC______GT____TTCCAA
18._SCA_5___
__TTAA__CC______GT____TTCCAA
19._SCA_5___
__TTAA__CC______GT____TTCCAA
20._SCA_5___
__TTAA__CC______GT____TTCCAA
21._SCA_5___
__TTAA__CC______GT____TTCCAA
22._SCA_5___
__TTAA__CC______GT____TTCCAA
23._SCA_5___
__TTAA__CC______GT____TTCCAA
24._SCA_3___
GGTTAACCCCGG__TTGT__CCCTCCAA
25._SCA_5___
__TTAA__CC______GT____TTCCAA
26._SCA_3___
__TTAA__CC______GT____CTCCAA
27._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
28._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
29._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
30._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
31._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
32._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
33._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
34._SCA_3___
GGTTAACCCCGGGGTTGT__CCCTCCAA
35._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
36._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
37._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
38._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
39._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
40._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
41._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
42._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
43._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
44._SCA_19___
GGTTAACCCCGGGGTTGGCTCCTTCCAG
45._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
46._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
47._SCA_5___
GGTTAACCCCGGAGTTGTTTCCTTCCAA
48._SCA_19___
GGTTAACCCCGGGGTTGG__CCTTCCAG

Input profile: SCA_11 RUQ_374

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SCA_11

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

2._SCA_11 RUQ_374

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 4
 Dapeng Zhang, 2016

4._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 5
 Dapeng Zhang, 2016

5._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 7
 Dapeng Zhang, 2016

6._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 9
 Dapeng Zhang, 2016

7._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 10
 Dapeng Zhang, 2016

8._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 11
 Dapeng Zhang, 2016

9._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 1 > FP
 Dapeng Zhang, 2016

10._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 2 > FP
 Dapeng Zhang, 2016

11._SCA_3

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 3 > FP
 Dapeng Zhang, 2016

12._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 1
 Dapeng Zhang, 2016

13._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 6
 Dapeng Zhang, 2016

14._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 10
 Dapeng Zhang, 2016

15._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 11
 Dapeng Zhang, 2016

16._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 12
 Dapeng Zhang, 2016

17._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 14
 Dapeng Zhang, 2016

18._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 15
 Dapeng Zhang, 2016

19._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 13 > F
 Dapeng Zhang, 2016

20._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 4 > FP
 Dapeng Zhang, 2016

21._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 5 > FP
 Dapeng Zhang, 2016

22._SCA_5

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 9 > FP
 Dapeng Zhang, 2016

23._SCA_5

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A25 T2
 Dapeng Zhang, 2016

24._SCA_3 GC-08-169-4-12

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._SCA_5

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 8
 Dapeng Zhang, 2016

26._SCA_3

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A26 T8
 Dapeng Zhang, 2016

27._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

28._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

29._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

30._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

33._SCA_3 GC-08-169-4-12

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

34._SCA_3 GC-08-169-4-12

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

35._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

36._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

37._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

38._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

40._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

41._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

42._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

43._SCA_5 GC-01-092-5-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

44._SCA_19 RUQ_46

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._SCA_5 GC-01-092-5-09

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

46._SCA_5 GC-01-092-5-09

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

47._SCA_5 GC-01-092-5-09

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

48._SCA_19 GC-03-004-1-04

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484