SNP Profiles matching EET 233

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGTTTGGCCCCAACCAGGGTTCC
1._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
2._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
3._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
4._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
5._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
6._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
7._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
8._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
9._EET_233_[ECU]___
____CCGTCT__CCCC__CC____TT__
10._EET_233_[ECU]___
______GTCT__CCCCAACC____TT__
11._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
12._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
13._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
14._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
15._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
16._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
17._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
18._EB_1516___
TTCCCCGTTTGGCCCCAGCCAGGGATCC
19._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
20._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACCTGTCGCCCCCTCTGGGGTTACGG
1._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
2._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
3._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
4._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
5._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
6._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
7._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
8._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
9._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
10._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
11._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
12._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
13._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
14._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
15._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
16._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
17._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
18._EB_1516___
AGACCTGTCGCCCCTTCTGGAGTTACGG
19._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
20._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CGTTAGCCGGAGTTGTCTCCCTCGGGX_X
1._EET_233_[ECU]___
__TTAGCC____________CTCCGGX_X
2._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
3._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
4._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
5._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
6._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
7._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
8._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
9._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
10._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
11._EET_233_[ECU]___
__TTAGCT______GG____CTCCGGX_X
12._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
13._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
14._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
15._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
16._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
17._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
18._EB_1516___
CGCTAGCCGGAGTTGTTTCCTTCGAGX_X
19._EET_233_[ECU]___
GGTTAGCCGGAGTTGG__CCCTCCGGX_X
20._EET_233_[ECU]___
GGTTAGCCGGAGTT__TTCCCTCCGGX_X

Input profile: SJ_1_/40_[POU] RUQ_1438

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_233_[ECU]

95.7 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

2._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

3._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

4._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

5._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

6._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

7._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

8._EET_233_[ECU]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

9._EET_233_[ECU]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

10._EET_233_[ECU]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU] RUQ_1517

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

14._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

15._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._EET_233_[ECU] GC-05-178-4-31

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

20._EET_233_[ECU] GC-05-085-2-36

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484