SNP Profiles matching CERRO AZUL 10

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACTTCTGGACCCAGTTAGGGAACC
1._IMC_14
____ACGTCT__AC__AGTT____AA__
2._RUQ_8
TTCCACGTCTGGACCGAGTTAGGGAACC
3._RUQ_1634
TTCCACGTCTGGACCGAGTTAGGGAACC
4._RUQ_761
TTCCACGTCTGGACCGAGTTAGGGAACC
5._RUQ_8
____ACGTCT__ACCGAGTT____AA__
6._IMC_11
____ACGTCT__ACCGAGTT____AA__
7._IMC_14
____ACGTCT__AACGAGTT____AA__
8._IMC_14
____ACGTCT__AACGAGTT____AA__
9._IMC_14
____ACGTCT__AACGAGTT____AA__
10._IMC_14
____ACGTCT__AACGAGTT____AA__
11._IMC_14
____ACGTCT__AACGAGTT____AA__
12._IMC_14
____ACGTCT__AACGAGTT____AA__
13._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
14._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
15._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
16._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
17._IMC_11
____ACGTCT__AACGAGTT____AA__
18._IMC_11
____ACGTCT__AACGAGTT____AA__
19._IMC_11
____ACGTCT__AACGAGTT____AA__
20._IMC_11
____ACGTCT__AACGAGTT____AA__
21._IMC_14
____ACGTCT__AACGAGTT____AA__
22._IMC_14
____ACGTCT__AACGAGTT____AA__
23._IMC_14
____ACGTCT__AACGAGTT____AA__
24._IMC_14
____ACGTCT__AACGAGTT____AA__
25._IMC_14
____ACGTCT__AACGAGTT____AA__
26._IMC_14
____ACGTCT__AACGAGTT____AA__
27._IMC_14
____ACGTCT__AACGAGTT____AA__
28._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
29._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
30._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
31._RUQ_1599
TTCCCCTTCCGGACCGAGTTAGGGAACC
32._IMC_11
____ACGTCT__AACGAGTT____AA__
33._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
34._RUQ_11
______GTCT__ACCCAGCT____AA__
35._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
36._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
37._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
38._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
39._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
40._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
41._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
42._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
43._GC-04-054-3-18
TTCCACGTCTGGAACGAGTTAGGGAACC
44._RUQ_11
TTCCCCGTCTGGACCCAGTTAGGGAACC
45._RUQ_1633
TTCCCCGTCTGGACCCAGTTAGGGAACC
46._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTGGGGAACTCCTTGGGGTTAACC
1._IMC_14
AACCCTGGGGAA__CC__GG______CC
2._RUQ_8
AACCCTGGGGAACCCCTTGGGGTTACCC
3._RUQ_1634
AACCCTGGGGAACCCCTTGGGGTTACCC
4._RUQ_761
AACCCTGGGGAACCCCTTGGGGTTACCC
5._RUQ_8
AACCCTGGGGAA__CC__GG______CC
6._IMC_11
AACCCTGGGGAA__CC__GG______CC
7._IMC_14
AACCCTGGGGAA__CC__GG______CC
8._IMC_14
AACCCTGGGGAA__CC__GG______CC
9._IMC_14
AACCCTGGGGAA__CC__GG______CC
10._IMC_14
AACCCTGGGGAA__CC__GG______CC
11._IMC_14
AACCCTGGGGAA__CC__GG______CC
12._IMC_14
AACCCTGGGGAA__CC__GG______CC
13._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
14._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
15._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
16._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
17._IMC_11
AACCCTGGGGAA__CC__GG______CC
18._IMC_11
AACCCTGGGGAA__CC__GG______CC
19._IMC_11
AACCCTGGGGAA__CC__GG______CC
20._IMC_11
AACCCTGGGGAA__CC__GG______CC
21._IMC_14
AACCCTGGGGAA__CC__GG______CC
22._IMC_14
AACCCTGGGGAA__CC__GG______CC
23._IMC_14
AACCCTGGGGAA__CC__GG______CC
24._IMC_14
AACCCTGGGGAA__CC__GG______CC
25._IMC_14
AACCCTGGGGAA__CC__GG______CC
26._IMC_14
AACCCTGGGGAA__CC__GG______CC
27._IMC_14
AACCCTGGGGAA__CC__GG______CC
28._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
29._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
30._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
31._RUQ_1599
AACCCTGTGGAACTCCTTGGGGTTAACC
32._IMC_11
AA__CTGGGGAA__CC__GG______CC
33._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT__CC
34._RUQ_11
AACCCTGTGGAA__CC__GG______CC
35._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
36._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
37._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
38._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
39._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
40._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
41._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
42._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
43._GC-04-054-3-18
AACCCTGGGGAACCCCCCGGGGTTACCC
44._RUQ_11
AACCCTGTGGAACCCCTTGGGGTTACCC
45._RUQ_1633
AACCCTGTGGAACCCCTTGGGGTTACCC
46._GC-04-029-2-11
AA__CTGGGGAACCCCCCGGGGTTACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCTGGGGTTTTTTCCTTCGAG
1._IMC_14
__CCAA__CT______GT____TTCGAG
2._RUQ_8
CCCCAACCCTGGGGTTGTTTCCTTCGAG
3._RUQ_1634
CCCCAACCCTGGGGTTGTTTCCTTCGAG
4._RUQ_761
CCCCAACCCTGGGGTTGTTTCCTTCGAG
5._RUQ_8
__CCAA__CT______GT____TTCGAG
6._IMC_11
__CCAA__CT______GT____TTCGAG
7._IMC_14
__CCAA__CT____________TTCGAG
8._IMC_14
__CCAA__CT____________TTCGAG
9._IMC_14
__CCAA__CT____________TTCGAG
10._IMC_14
__CCAA__CT____________TTCGAG
11._IMC_14
__CCAA__CT____________TTCGAG
12._IMC_14
__CCAA__CT____________TTCGAG
13._GC-03-030-3-09
CCCCAACCCTGGGGTT______TTCGAG
14._GC-03-030-3-09
CCCCAACCCTGGGGTT______TTCGAG
15._GC-03-030-3-09
CCCCAACCCTGGGGTT______TTCGAG
16._GC-03-030-3-09
CCCCAACCCTGGGGTT______TTCGAG
17._IMC_11
__CCAA__CT______GT____TTCGAG
18._IMC_11
__CCAA__CT______GT____TTCGAG
19._IMC_11
__CCAA__CT______GT____TTCGAG
20._IMC_11
__CCAA__CT______GT____TTCGAG
21._IMC_14
__CCAA__CT______GT____TTCGAG
22._IMC_14
__CCAA__CT______GT____TTCGAG
23._IMC_14
__CCAA__CT______GT____TTCGAG
24._IMC_14
__CCAA__CT______GT____TTCGAG
25._IMC_14
__CCAA__CT______GT____TTCGAG
26._IMC_14
__CCAA__CT______GT____TTCGAG
27._IMC_14
__CCAA__CT______GT____TTCGAG
28._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
29._GC-03-030-3-09
CCCCAACCCTGGGGTT__TTCCTTCGAG
30._GC-03-030-3-09
CCCCAACCCTGGGGTT__TTCCTTCGAG
31._RUQ_1599
CC__AACCCCGGGGTTGGTTCCTTCGAG
32._IMC_11
__CCAA__CT______GT____TTCGAG
33._GC-03-030-3-09
CCCCAACCCTGGGGTTGT____TTCGAG
34._RUQ_11
__CTAA__CT______TT______CGAG
35._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
36._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
37._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
38._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
39._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
40._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
41._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
42._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
43._GC-04-054-3-18
CCCCAACCCTGGGGTTGTTTCCTTCGAG
44._RUQ_11
CCTTAACCCTGGGGTTTTCTCCTTCGAG
45._RUQ_1633
CCTTAACCCTGGGGTTTTCTCCTTCGAG
46._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG

Input profile: CERRO_AZUL_10 RUQ_936

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_14

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

2._IMC_11 RUQ_8

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_14 RUQ_1634

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_6 RUQ_761

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._IMC_11 RUQ_8

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._IMC_11

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

7._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

8._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

9._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

10._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

11._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

12._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

13._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

18._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

19._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

20._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016

21._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

22._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

23._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

24._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

25._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

26._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

27._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

28._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

31._EBC_148 RUQ_1599

91.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._IMC_11

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

33._IMC_14 GC-03-030-3-09

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._IMC_54 RUQ_11

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

35._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

36._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

38._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

40._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

42._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

43._IMC_14 GC-04-054-3-18

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

44._IMC_54 RUQ_11

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._IMC_58 RUQ_1633

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

46._IMC_11 GC-04-029-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484