SNP Profiles matching EET 233A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTACCCGTCTGGCCCCAACCAGGGTTCC
1._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
2._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
3._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
4._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
5._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
6._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
7._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACCAGGGTTCC
8._EET_233_[ECU]___
TTACCCGTCTGGCCCC__CCAGGGTTCC
9._EET_233_[ECU]___
TTACCCGTCTGGCCCCAACC__GGTTCC
10._EET_233_[ECU]___
TTAC__GTCTGGCCCCAACCAGGGTTCC
11._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
12._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
13._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
14._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
15._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
16._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
17._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
18._EET_233_[ECU]___
____CCGTCT__CCCC__CC____TT__
19._EET_233_[ECU]___
______GTCT__CCCCAACC____TT__
20._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
21._EET_233_[ECU]___
____CCGTCT__CCCCAACC____TT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACCTGTGGCCCTCTTTGGAGTTACGG
1._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
2._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
3._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
4._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
5._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
6._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
7._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
8._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTTACGG
9._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTT__GG
10._EET_233_[ECU]___
AGACCTGTCGCCCTCTTTGGAGTT__GG
11._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
12._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
13._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
14._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
15._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
16._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
17._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
18._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
19._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
20._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
21._EET_233_[ECU]___
AGACCTGTCGCC__CT__GG______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
1._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
2._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
3._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
4._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
5._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
6._EET_233_[ECU]___
GGTTAGCCGGAGTTGG__CCCTCCGGX_X
7._EET_233_[ECU]___
GGTTAGCCGGAGTT__TTCCCTCCGGX_X
8._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
9._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
10._EET_233_[ECU]___
GGTTAGCCGGAGTTGGTTCCCTCCGGX_X
11._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
12._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
13._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
14._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
15._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
16._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
17._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
18._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
19._EET_233_[ECU]___
__TTAGCC______GG____CTCCGGX_X
20._EET_233_[ECU]___
__TTAGCC____________CTCCGGX_X
21._EET_233_[ECU]___
__TTAGCT______GG____CTCCGGX_X

Input profile: EET_233_[ECU] RUQ_1517

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_233_[ECU] GC-05-085-2-36

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._EET_233_[ECU] GC-05-149-4-02

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

3._EET_233_[ECU] GC-05-149-4-02

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_233_[ECU] GC-05-178-4-31

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._EET_233_[ECU] GC-05-178-4-31

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_233_[ECU] GC-05-178-4-31

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._EET_233_[ECU] GC-05-085-2-36

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

8._EET_233_[ECU] GC-05-085-2-36

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

9._EET_233_[ECU] GC-05-085-2-36

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

10._EET_233_[ECU] GC-05-085-2-36

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

11._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

12._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

13._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

14._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

15._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

16._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

17._EET_233_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

18._EET_233_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

19._EET_233_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

20._EET_233_[ECU]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

21._EET_233_[ECU] RUQ_1517

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484