SNP Profiles matching GDL 3

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 Key

 1234567891011121314
_Input profile
TTCCCCTTCCGGAACCAAGGGGAACCTT
1._MAR_1
____CCTTCC__AA__AA____AACCTT
2._MAR_20
____CCTTCC__AA__AA____AACCTT
3._RUQ_678
TTCCCCTTCCGGAACCAAGGGGAACCTT
4._RUQ_557
TTCCCCTTCCGGAACCAAGGGGAACCTT
5._RUQ_683
TTCCCCTTCCAGAACCAAGGGGAACC__
6._RUQ_436
TTCCCCTTCCGGAACCAAGGGGAACCTT
7._RUQ_554
TTCCCCTTCCGGAACCAAGGGGAACCTT
8._RUQ_44
TTCCCCTTCCGGAACCAAGGGGAACC__
9._GC-08-110-3-09
TTCCCCTTCCGGAACCAAGGGGAACCTT
10._RUQ_936
TTCCCCTTCCGGAACCAGGGGGAACC__
11._RUQ_544
TTCCCCTTCCGGAACCAGGGGGAACC__
12._RUQ_549
TTACCCTTCCAGAACCAAGGGG__CC__
13._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
14._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
15._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
16._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
17._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
18._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
19._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
20._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
21._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
22._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
23._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
24._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
25._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
26._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
27._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
28._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
29._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
30._GC-01-056-3-11
TTCCCCTTCCGGAACCAAGGGGAACCTT
31._GC-08-071-1-93
TTCCCCTTCCGGAACCAAGGGGAACCTT
32._GC-08-071-1-93
TTCCCCTTCCGGAACCAAGGGGAACCTT
33._GC-08-071-1-93
TTCCCCTTCCGGAACCAAGGGGAACCTT
34._GC-08-071-1-93
TTCCCCTTCCGGAACCAAGGGGAACCTT
35._RUQ_648
TTCCAATTCCGGAACCAAGGGGAACCTT
36._GC-08-090-2-13
TTCCCCTTCCGGAACCAAGGGGAACCTT
37._GC-08-090-2-13
TTCCCCTT__GGAACCAAGGGGAACCTT
38._GC-01-056-3-11
TTCCCCTTCCGG__CCAAGGGGAACCTT
39._GC-01-056-3-11
TTCC__TTCCGGAACCAAGGGGAACCTT
 1516171819202122232425262728
_Input profile
GGAATTTTTTGGTTCCCCAACCGGTTTT
1._MAR_1
GGAA__TT______CCCCAACC____TT
2._MAR_20
GGAA__TT______CCCCAACC____TT
3._RUQ_678
GGCCTTTTTTGGTTCCCCAACCGGTTTT
4._RUQ_557
GGAACCTTTTGGTTCCCCAACCGGTTTT
5._RUQ_683
GGAACCTTTTGGTTCCCCAACCGGTTTT
6._RUQ_436
CCAATTTTTTGGTTCCCCGGCCGGTTTT
7._RUQ_554
GGAACCCCTTGGTTCCCCAACCGGTTTT
8._RUQ_44
CCAATTTTTTGGTTCCCCGGCCGGTTTT
9._GC-08-110-3-09
CGAATTTTCCGGTTCCCCGGCCGGTTTT
10._RUQ_936
CGCCTTTTTTGTTTCCCCAACCGGTTTT
11._RUQ_544
CGCCTTTTTTGTTTCCCCAACCGGTTTT
12._RUQ_549
GGAACCTTTTGGTTCCCCAACCGGTTTT
13._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
14._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
15._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
16._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
17._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
18._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
19._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
20._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
21._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
22._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
23._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
24._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
25._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
26._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
27._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
28._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
29._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
30._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
31._GC-08-071-1-93
CCAATTTTCCGGTTCCCCGGCCGGTTTT
32._GC-08-071-1-93
CCAATTTTCCGGTTCCCCGGCCGGTTTT
33._GC-08-071-1-93
CCAATTTTCCGGTTCCCCGGCCGGTTTT
34._GC-08-071-1-93
CCAATTTTCCGGTTCCCCGGCCGGTTTT
35._RUQ_648
GGAACCCCTTGGTTCCCCAACCGGTTTT
36._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTT__
37._GC-08-090-2-13
CCAATTTTCCGGTTCCCCGGCCGGTTTT
38._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
39._GC-01-056-3-11
CCAATTTTCCGGTTCCCCGGCCGGTTTT
 293031           
_Input profile
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._MAR_1
__GGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MAR_20
__GGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_678
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_557
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_683
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._RUQ_436
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RUQ_554
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_44
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-08-110-3-09
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_936
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_544
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_549
CTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-08-071-1-93
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-08-071-1-93
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-08-071-1-93
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-08-071-1-93
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._RUQ_648
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._GC-08-090-2-13
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
39._GC-01-056-3-11
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GDL_3 RUQ_553

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
18 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
18 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._LCT_EEN_62_/S-4 RUQ_678

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._MAR_9 RUQ_557

96.8 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GS_13 RUQ_683

95 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._B_12_/2_[POU] RUQ_436

93.5 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._GDL_7 RUQ_554

93.5 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._SC_9_[UNK] RUQ_44

93.3 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PH_9_[BRA] GC-08-110-3-09

91.9 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._CERRO_AZUL_10 RUQ_936

91.7 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._DOM_4 RUQ_544

91.7 %
30 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._DOM_30 RUQ_549

91.4 %
29 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

22._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

23._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

26._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

28._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

31._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

32._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

33._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

34._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._GF_32 RUQ_648

90.3 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

36._BE_10 GC-08-090-2-13

90 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

37._BE_10 GC-08-090-2-13

90 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

38._GU_207 GC-01-056-3-11

90 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

39._GU_207 GC-01-056-3-11

90 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP529 14TcSNP534 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP702 20TcSNP723
21TcSNP799 22TcSNP878 23TcSNP891 24TcSNP998 25TcSNP1060
26TcSNP1063 27TcSNP1126 28TcSNP1253 29TcSNP1309 30TcSNP1458
31TcSNP1484