SNP Profiles matching GDL 7

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 Key

 1234567891011121314
_Input profile
TTCCCCTTCCGGAACCAACCGGGGAACC
1._MAR_1
____CCTTCC__AA__AACC____AA__
2._MAR_20
____CCTTCC__AA__AACC____AA__
3._RUQ_648
TTCCAATTCCGGAACCAACCGGGGAACC
4._RUQ_557
TTCCCCTTCCGGAACCAACCGGGGAACC
5._RUQ_683
TTCCCCTTCCAGAACCAACCGGGGAACC
6._RUQ_553
TTCCCCTTCCGGAACCAA__GGGGAA__
7._RUQ_678
TTCCCCTTCCGGAACCAACCGGGGAACC
8._RUQ_549
TTACCCTTCCAGAACCAACCGGGG__CC
9._RUQ_673
TTCCCCTTCCGGAACCAACCGGGGAACC
10._RUQ_1325
TTCCCCTTCCGGAACCAACCGGGGAACC
11._RUQ_843
TTCCCCTTCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTTTGGAACCCCTTGGGGTTCCGG
1._MAR_1
AACCTTTTGGAA__TT__________GG
2._MAR_20
AACCTTTTGGAA__TT__________GG
3._RUQ_648
AACCTTTTGGAACCCCTTGGGGTTCCGG
4._RUQ_557
AACCTTTTGGAACCTTTTGGGGTTAAGG
5._RUQ_683
AACC__TTGGAACCTTTTGGGGTTCCCG
6._RUQ_553
__CCTT__GGAATTTTTTGG__TT____
7._RUQ_678
AACCTTTTGGCCTTTTTTGGGGTTCCGG
8._RUQ_549
AACC__TTGGAACCTTTTGGGGTTACGG
9._RUQ_673
AACCTTTTGGCCCCCTTTGGGGTTACGG
10._RUQ_1325
AACCTTTTCCAACCCCTTGGGGTTAAGG
11._RUQ_843
AACC__TTCCAACCCCTTGGGGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAAAATTCCGGAATTTTTTTTCCGG
1._MAR_1
CCCC__AA__CC______TT____CCGG
2._MAR_20
CCCC__AA__CC______TT____CCGG
3._RUQ_648
CCCC__AATTCCGGGGTTTTTTTTCCGG
4._RUQ_557
CCCC__AATTCCGGAATTTTTTTTCCGG
5._RUQ_683
CCCC__AATTCCGGAATTTTTTTTCCGG
6._RUQ_553
CCCC__AA__CCGG__TTTTTT____GG
7._RUQ_678
CCCC__AATTCCGGAATTTTTTTTCCGG
8._RUQ_549
CCCCAAAATTCCGGAATTTTCTTTCCGG
9._RUQ_673
CGCC__AGTTCCGGAATTTTTTTTCCGG
10._RUQ_1325
CCCCAAGGTTCCGGAATTTTCCTTCCGG
11._RUQ_843
CCCC__GGTTCCGGAATTTTCCTTCCGG
 43             
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._MAR_1
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MAR_20
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_648
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_557
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_683
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._RUQ_553
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RUQ_678
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RUQ_549
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RUQ_673
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_1325
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_843
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GDL_7 RUQ_554

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

95.7 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

95.7 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._GF_32 RUQ_648

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._MAR_9 RUQ_557

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GS_13 RUQ_683

95.1 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._GDL_3 RUQ_553

93.5 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._LCT_EEN_62_/S-4 RUQ_678

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._DOM_30 RUQ_549

92.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._DOM_25 RUQ_673

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._SPEC_41_/6-18 RUQ_1325

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._APA_4 RUQ_843

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484