SNP Profiles matching EET 399

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTACTTGGCTCCAAGGCCAA
1._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._UF_12___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
15._EET_399_[ECU]___
__AGCCTT______GG________CCAA
16._EET_400_[ECU]___
__AGCCTT__ACTTGTCT____GGCCAA
17._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAA
18._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
38._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
39._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAG
41._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
42._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAC
1._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
2._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
3._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
4._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
5._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
6._UF_12___
TTAACGCTCTCGGTAACTACGGGGCTAC
7._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
8._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
9._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
10._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
11._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
12._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
13._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
14._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
15._EET_399_[ECU]___
________TTCGGT__CTACGGGGCTAC
16._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
17._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
18._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
19._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
20._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
21._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
22._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
23._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
24._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
25._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
26._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
27._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
28._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
29._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
30._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
31._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
32._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
33._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
34._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
35._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
36._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
37._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
38._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
39._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
40._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
41._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
42._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACCGGGGCCCTGTACATGGX_XX_X
1._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
2._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
3._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
4._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
5._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
6._UF_12___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
7._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
8._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
9._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
10._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
11._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
12._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
13._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
14._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
15._EET_399_[ECU]___
AG__AACCGGGGCCCTGTAC____X_XX_X
16._EET_400_[ECU]___
AGGGAACCAG__CCCTGTACATGGX_XX_X
17._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
18._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
19._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
20._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
21._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
22._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
23._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
24._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
25._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
26._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
27._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
28._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
29._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
30._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
31._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
32._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
33._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
34._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
35._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
36._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
37._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
38._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
39._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
40._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
41._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X
42._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X

Input profile: EET_399_[ECU] RUQ_745

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._EET_399_[ECU]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

6._UF_12

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

7._EET_399_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

10._EET_399_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

11._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

14._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

95.7 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.5 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

18._EET_400_[ECU]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

19._EET_400_[ECU]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

20._EET_400_[ECU]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

21._EET_400_[ECU] GC-01-066-4-02

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._EET_400_[ECU] GC-01-066-4-02

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

24._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

25._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

26._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

27._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

28._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

29._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

30._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

31._POUND_10_/B

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

32._POUND_10_/B GC-01-115-6-12

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

33._POUND_10_/B GC-01-115-6-12

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._POUND_10_/B GC-08-162-4-05

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

40._EET_400_[ECU] RUQ_760

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

41._POUND_10_/B

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

42._POUND_10_/B GC-08-162-4-05

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25