SNP Profiles matching EET 399

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._UF_12___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._EET_399_[ECU]___
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._EET_399_[ECU]___
__AGCCTT______GG________CCAA
16._EET_400_[ECU]___
__AGCCTT__ACTTGTCT____GGCCAA
17._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
38._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
39._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
41._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAG
1._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
2._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
3._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
4._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
5._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
6._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
7._UF_12___
TTAACGCTCTCGGTAACTACGGGGCTAG
8._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
9._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
10._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAG
11._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAG
12._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
13._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
14._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAG
15._EET_399_[ECU]___
________TTCGGT__CTACGGGGCTAG
16._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
17._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
18._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
19._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
20._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
21._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
22._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
23._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
24._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
25._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
26._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
27._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
28._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
29._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
30._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
31._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
32._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
33._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
34._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
35._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
36._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
37._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
38._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
39._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
40._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAG
41._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
1._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
2._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
3._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
4._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
5._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
6._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
7._UF_12___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
8._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
9._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
10._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
11._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
12._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
13._EET_399_[ECU]___
GGAACCGGGGCC__GTACATGGX_XX_XX_X
14._EET_399_[ECU]___
GGAACCGGGGCCCTGTACATGGX_XX_XX_X
15._EET_399_[ECU]___
__AACCGGGGCCCTGTAC____X_XX_XX_X
16._EET_400_[ECU]___
GGAACCAG__CCCTGTACATGGX_XX_XX_X
17._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
18._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
19._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
20._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
21._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
22._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
23._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
24._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
25._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
26._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
27._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
28._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
29._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
30._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
31._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
32._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
33._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
34._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
35._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
36._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
37._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
38._POUND_10_/B___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
39._POUND_10_/B___
GG__CTAGCCCCCTGTACATGGX_XX_XX_X
40._POUND_10_/B___
GG__CTAGCCCCCTGTACATGGX_XX_XX_X
41._EET_400_[ECU]___
GGAACTAGCCCCCTGTACATGGX_XX_XX_X

Input profile: EET_399_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._UF_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

11._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.1 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91 %
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25