SNP Profiles matching EET 399

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGGCTCCAAGGCCAA
1._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
2._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
3._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
4._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
5._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
6._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
7._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
8._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
9._UF_12
CCAGCCTTCTAATTGGCTCCAAGGCCAA
10._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
11._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
12._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
13._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
14._RUQ_745
CCAGCCTTCTACTTGGCTCCAAGGCCAA
15._RUQ_745
__AGCCTT______GG________CCAA
16._EET_400_[ECU]
__AGCCTT__ACTTGTCT____GGCCAA
17._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
38._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
39._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
41._EET_400_[ECU]
CCAGCCTTCTACTTGTCTCCAAGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGTAACTACGGGGCTAC
1._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
2._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
3._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
4._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
5._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
6._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
7._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
8._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
9._UF_12
TTAACGCTCTCGGTAACTACGGGGCTAC
10._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGG__CTAC
11._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCT__
12._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCT__
13._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGG__CTAC
14._RUQ_745
TTAACGCTCTCGGTAACTACGGGGCTAC
15._RUQ_745
________TTCGGT__CTACGGGGCTAC
16._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
17._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
18._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
19._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
20._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
21._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
22._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
23._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
24._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
25._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
26._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
27._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
28._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
29._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
30._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
31._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
32._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
33._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
34._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
35._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
36._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
37._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
38._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
39._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
40._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
41._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
1._EET_399_[ECU]
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
2._EET_399_[ECU]
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
3._EET_399_[ECU]
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
4._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
5._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
6._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
7._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
8._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
9._UF_12
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
10._EET_399_[ECU]
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
11._EET_399_[ECU]
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
12._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
13._GC-04-047-3-11
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
14._RUQ_745
AGGGAACCGGGGCCGTACATGGX_XX_XX_X
15._RUQ_745
AG__AACCGGGGCCGTAC____X_XX_XX_X
16._EET_400_[ECU]
AGGGAACCAG__CCGTACATGGX_XX_XX_X
17._EET_400_[ECU]
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
18._EET_400_[ECU]
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
19._EET_400_[ECU]
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
20._GC-01-066-4-02
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
21._GC-01-066-4-02
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
22._GC-01-066-4-02
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
23._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
24._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
25._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
26._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
27._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
28._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
29._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
30._POUND_10_/B
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
31._GC-01-115-6-12
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
32._GC-01-115-6-12
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
33._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
34._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
35._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
36._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
37._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
38._GC-08-162-4-05
AGGGAACTAGCCCCGTACATGGX_XX_XX_X
39._POUND_10_/B
AGGG__CTAGCCCCGTACATGGX_XX_XX_X
40._GC-08-162-4-05
AGGG__CTAGCCCCGTACATGGX_XX_XX_X
41._EET_400_[ECU]
AGGGAACTAGCCCCGTACATGGX_XX_XX_X

Input profile: EET_399_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

3._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

4._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

7._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._UF_12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

10._EET_399_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

11._EET_399_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

12._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.1 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91 %
39 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25