SNP Profiles matching UF 12

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AGCCTTACTTGTCTGGCCAATTAACGCT
1._EET_400_[ECU]___
AGCCTTACTTGTCTGGCCAATTAACGCT
2._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
3._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
4._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
5._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
6._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
7._EET_400_[ECU]___
AGCCTTAATTGTCTGGCCAATTAACGCT
8._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
9._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
10._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
11._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
12._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
13._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
14._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
15._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
16._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
17._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
18._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
19._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
20._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
21._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
22._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
23._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
24._EET_400_[ECU]___
AGCCTTACTTGTCTGGCCAGTTAACGCT
25._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
26._POUND_10_/B___
AGCCTTAATTGTCTGGCCAATTAACGCT
27._EET_399_[ECU]___
AGCCTTACTTGGCTGGCCAATTAACGCT
28._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
29._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
30._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
31._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
32._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
33._UF_12___
AGCCTTAATTGGCTGGCCAATTAACGCT
34._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
35._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
36._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
37._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
38._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
39._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
40._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
41._EET_399_[ECU]___
AGCCTTAATTGGCTGGCCAATTAACGCT
42._EET_400_[ECU]___
AGCCTT____GT____CCAA________
43._EET_399_[ECU]___
AGCCTT____GG____CCAA________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTCGGGAACTACGGGGCTACAGGGAACC
1._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
2._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
3._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
4._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
5._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
6._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
7._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
8._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
9._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
10._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
11._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
12._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
13._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
14._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
15._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
16._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
17._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
18._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
19._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
20._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
21._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
22._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
23._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGGAACT
24._EET_400_[ECU]___
CTCGGGAACTACGGGGCTACAGGGAACT
25._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGG__CT
26._POUND_10_/B___
CTCGGGAACTACGGGGCTACAGGG__CT
27._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
28._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
29._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
30._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
31._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
32._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
33._UF_12___
CTCGGTAACTACGGGGCTACAGGGAACC
34._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
35._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
36._EET_399_[ECU]___
CTCGGTAACTACGG__CTACAGGGAACC
37._EET_399_[ECU]___
CTCGGTAACTACGGGGCT__AGGGAACC
38._EET_399_[ECU]___
CTCGGTAACTACGGGGCT__AGGGAACC
39._EET_399_[ECU]___
CTCGGTAACTACGG__CTACAGGGAACC
40._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
41._EET_399_[ECU]___
CTCGGTAACTACGGGGCTACAGGGAACC
42._EET_400_[ECU]___
TTCGGG__CTACCGGGCTACAG__AACT
43._EET_399_[ECU]___
TTCGGT__CTACGGGGCTACAG__AACC
 29 30 31 32 33 34 35        
_Input profile
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
1._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
2._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
3._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
4._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
5._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
6._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
7._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
8._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
9._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
10._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
11._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
12._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
13._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
14._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
15._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
16._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
17._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
18._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
19._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
20._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
21._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
22._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
23._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
24._EET_400_[ECU]___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
25._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
26._POUND_10_/B___
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
27._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
28._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
29._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
30._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
31._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
32._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
33._UF_12___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
34._EET_399_[ECU]___
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
35._EET_399_[ECU]___
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
36._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
37._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
38._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
39._EET_399_[ECU]___
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
40._EET_399_[ECU]___
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
41._EET_399_[ECU]___
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
42._EET_400_[ECU]___
AGCCCTGTAC____X_XX_XX_XX_XX_XX_XX_X
43._EET_399_[ECU]___
GGCCCTGTAC____X_XX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU]

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._EET_400_[ECU]

98.6 %
35 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

2._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

3._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

5._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

8._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

9._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

11._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

12._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

13._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

14._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

15._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

16._POUND_10_/B GC-01-115-6-12

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._POUND_10_/B GC-01-115-6-12

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._EET_400_[ECU] RUQ_760

97.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._POUND_10_/B

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

26._POUND_10_/B GC-08-162-4-05

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_399_[ECU] RUQ_745

95.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._EET_399_[ECU]

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

29._EET_399_[ECU]

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

30._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

32._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

33._UF_12

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

34._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

35._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

36._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

37._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

38._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

40._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

41._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

42._EET_400_[ECU] RUQ_760

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._EET_399_[ECU] RUQ_745

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25