SNP Profiles matching EET-399

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGTCTCCAAGGCCAA
1._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._EET_400_[ECU]___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
8._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
9._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
10._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
11._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
12._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
13._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
14._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
15._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
16._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
17._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAA
25._EET_400_[ECU]___
CCAGCCTTCTACTTGTCTCCAAGGCCAG
26._EET_400_[ECU]___
__AGCCTT__ACTTGTCT____GGCCAA
27._EET_400_[ECU]___
__AGCCTT______GT________CCAA
28._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
29._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
30._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
31._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
32._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
33._UF_12___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
34._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
35._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
36._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
37._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
38._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
39._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
40._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
41._EET_399_[ECU]___
CCAGCCTTCTAATTGGCTCCAAGGCCAA
42._EET_399_[ECU]___
CCAGCCTTCTACTTGGCTCCAAGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
2._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
3._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
4._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
5._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
6._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
7._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
8._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
9._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
10._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
11._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
12._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
13._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
14._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
15._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
16._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
17._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
18._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
19._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
20._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
21._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
22._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
23._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
24._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
25._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
26._EET_400_[ECU]___
TTAACGCTCTCGGGAACTACGGGGCTAC
27._EET_400_[ECU]___
________TTCGGG__CTACCGGGCTAC
28._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
29._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
30._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
31._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
32._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
33._UF_12___
TTAACGCTCTCGGTAACTACGGGGCTAC
34._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
35._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
36._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
37._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
38._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCT__
39._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGG__CTAC
40._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
41._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
42._EET_399_[ECU]___
TTAACGCTCTCGGTAACTACGGGGCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
9._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
10._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
11._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
12._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
13._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
14._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
15._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
16._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
17._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
18._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
19._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
20._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
21._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
22._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X
23._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X
24._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
25._EET_400_[ECU]___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
26._EET_400_[ECU]___
AGGGAACCAG__CCCTGTACATGGX_XX_X
27._EET_400_[ECU]___
AG__AACTAGCCCCCTGTAC____X_XX_X
28._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
29._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
30._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
31._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
32._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
33._UF_12___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
34._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
35._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
36._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
37._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
38._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
39._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X
40._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
41._EET_399_[ECU]___
AGGGAACCGGGGCC__GTACATGGX_XX_X
42._EET_399_[ECU]___
AGGGAACCGGGGCCCTGTACATGGX_XX_X

Input profile: EET_400_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

6._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

7._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

14._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

15._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

23._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

25._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._EET_400_[ECU] RUQ_760

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._EET_399_[ECU]

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

29._EET_399_[ECU]

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

30._EET_399_[ECU] GC-04-047-3-11

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._EET_399_[ECU] GC-04-047-3-11

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

32._EET_399_[ECU] GC-04-047-3-11

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

33._UF_12

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

34._EET_399_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

35._EET_399_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

36._EET_399_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

37._EET_399_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

38._EET_399_[ECU] GC-04-047-3-11

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._EET_399_[ECU] GC-04-047-3-11

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

40._EET_399_[ECU] GC-04-047-3-11

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

41._EET_399_[ECU] GC-04-047-3-11

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

42._EET_399_[ECU] RUQ_745

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25