SNP Profiles matching GU 144/C

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCCTACCCTTCCTTATAACCGG
1._GU_144_/C___
TTAAGGCCCTACCCTTCCTTATAACCGG
2._CRU_104___
__AAGGCC______TT________CTGG
3._CRU_111___
__AAGGCC______TT________CTGG
4._N_38_[T38]___
__AAGGCC______TT________CCGG
5._B_12_/2_[POU]___
__AAGGCC______TT________CCGG
6._IFC_5_[CIV]___
__AAGGCC______TT________CTGG
7._M_8_[SUR]___
__AAGGCC______TT________CCGG
8._SC_9_[UNK]___
__AAGGCC______TT________CCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACCTTCCGGGGGGTTACCCTTTTCC
1._GU_144_/C___
TTAACCTTCCGGGGGGTTACCCTTTTCC
2._CRU_104___
________CCGGGG__TTCCCCTTTTCC
3._CRU_111___
________CCGGGG__TTCCCCTTTTCC
4._N_38_[T38]___
________CCGGGG__TTAACCTT__CC
5._B_12_/2_[POU]___
________CCGGGG__TTAACCTTTTCC
6._IFC_5_[CIV]___
________CCGGGT__TTAACCTTCTCC
7._M_8_[SUR]___
________CCGGGG__TTAACCTTTTCC
8._SC_9_[UNK]___
________CCGGGG__TTAACCTT__CC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AAGGAACCAACCACGTACATCGX_XX_XX_X
1._GU_144_/C___
AAGGAACCAACCACGTACATCGX_XX_XX_X
2._CRU_104___
AA____CCAGCCACGTAC____X_XX_XX_X
3._CRU_111___
AA____CCAGCCACGTAC____X_XX_XX_X
4._N_38_[T38]___
AA____CCAACCAATTAC____X_XX_XX_X
5._B_12_/2_[POU]___
AA__AACCAACCAATTCC____X_XX_XX_X
6._IFC_5_[CIV]___
AA__AACCAACCACGTAC____X_XX_XX_X
7._M_8_[SUR]___
AA__AACCAACCAATTCC____X_XX_XX_X
8._SC_9_[UNK]___
AA__AACCAACCAATTCC____X_XX_XX_X

Input profile: GU_144_/C

 
Mars Center for Cocoa Science, Brazil
Location: 8619 1 > FP
 Dapeng Zhang, 2016

1._GU_144_/C GC-08-223-6-19

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._CRU_104 RUQ_1585

93.2 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CRU_111 RUQ_1460

93.2 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._N_38_[T38] RUQ_1159

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._B_12_/2_[POU] RUQ_436

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._IFC_5_[CIV] RUQ_848

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._M_8_[SUR] RUQ_1672

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._SC_9_[UNK] RUQ_44

90.9 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25