SNP Profiles matching OC 61 [VEN]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTGGGGCTTTAACCGTCTATAATTAACT
1._ICS_48___
CTAGGGCTTTAACCGTCTATAACTAACT
2._ICS_95___
CTAGGGTTTTAACCGTCTAAAACTAACT
3._ICS_95___
CTAGGGTTTTAACCGTCTAAAACTAACT
4._ICS_95___
CTAGGGTTTTAACCGTCTAAAACTAACT
5._ICS_95___
CTAGGGTTTTAACCGTCTAAAACTAACT
6._ICS_40___
____GGCTTTAA__GTCTAAAACTAACT
7._ICS_95___
CTAG__TTTTAACCGTCTAAAACTAACT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCCGTTAGCTCCCGGTCCCCAG
1._ICS_48___
AAGGTTCCCGTTAGCTACCGGTCTCCAG
2._ICS_95___
AAGGTTCCCGTTAGCTCCCCGTCTCCAG
3._ICS_95___
AAGGTTCCCGTTAGCTCCCCGTCTCCAG
4._ICS_95___
AAGGTTCCCGTTAGCTCCCCGTCTCCAG
5._ICS_95___
AAGGTTCCCGTTAGCTCCCCGTCTCCAG
6._ICS_40___
AAGGTTCCCGGTAGCT__CCGTCTCCAG
7._ICS_95___
AAGGTTCCCGTTAGCTCCCCGTCTCCAG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGATCTGGACTTGTACATGGX_XX_XX_XX_X
1._ICS_48___
GGATCTAGACCTGTACATGGX_XX_XX_XX_X
2._ICS_95___
GGATCTGGACCTGTACATGGX_XX_XX_XX_X
3._ICS_95___
GGATCTGGACCTGTACATGGX_XX_XX_XX_X
4._ICS_95___
GGATCTGGACCTGTACATGGX_XX_XX_XX_X
5._ICS_95___
GGATCTGGACCTGTACATGGX_XX_XX_XX_X
6._ICS_40___
GG__CTAGAC__GTACATGGX_XX_XX_XX_X
7._ICS_95___
GGATCTGGACCTGTACATGGX_XX_XX_XX_X

Input profile: OC_61_[VEN]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A C317 T1
 Dapeng Zhang, 2016

1._ICS_48

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

2._ICS_95

90.8 %
38 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

3._ICS_95

90.8 %
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P26 56
 Dapeng Zhang, 2016

4._ICS_95

90.8 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 10 C0204 2A
 Dapeng Zhang, 2016

5._ICS_95

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block1
 Dapeng Zhang, 2016

6._ICS_40

90.6 %
32 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

7._ICS_95 RUQ_1144

90.5 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25