SNP Profiles matching PA-107

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
1._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
2._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
3._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
4._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
5._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
6._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
7._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
8._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
9._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
10._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
11._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
12._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
13._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
14._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
15._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
16._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
17._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
18._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
19._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
20._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
21._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
22._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
23._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
24._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
25._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
26._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
27._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
28._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
29._PA_107_[PER]___
CCAGCGTTTTCCTT__CCCCAAAGCCCT
30._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
31._PA_107_[PER]___
CCAGCGTTTTCCTTTTCC__AAAGCCCT
32._PA_107_[PER]___
CCAGCGTTTTCCTTTTCC__AAAGCCCT
33._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
34._PA_107_[PER]___
CCAGCGTTTTCCTT__CCCCAAAGCCCT
35._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
36._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
37._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
38._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
39._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
40._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
41._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
42._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
43._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
44._LCT_EEN_37_/F___
CCAGCGCTTTCCTTTTCCCCAAAGCCCC
45._LCT_EEN_37_/F___
CCAGCGCTTTCCTTTTCCCCAAAGCCCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACGCTCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
12._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
13._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
14._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
15._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
16._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
17._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
18._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
19._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
20._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
21._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
22._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
23._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]___
AACG__CCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
29._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
30._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
31._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
32._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
33._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
34._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
35._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
36._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
37._PA_107_[PER]___
AACG__CCGGGGGGCTCCCGTTCTAAGG
38._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
39._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]___
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
41._PA_107_[PER]___
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]___
AACGCTCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]___
AACGCTCCGGGGAACTCCCGTTCTAAGG
44._LCT_EEN_37_/F___
AACGCTCCGGGGGGCTACCGGT__AAGG
45._LCT_EEN_37_/F___
AACGCTCCGGGGGGCTACCGGT__AAGG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
25._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
26._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
27._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
28._PA_107_[PER]___
GGAACCAGCCAACT__ACATGGX_XX_XX_X
29._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
30._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
31._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
32._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
33._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
34._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
35._PA_107_[PER]___
GGAACCAGCCAACT__ACATGGX_XX_XX_X
36._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
37._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
38._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
39._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
40._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
41._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
42._PA_107_[PER]___
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]___
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._LCT_EEN_37_/F___
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
45._LCT_EEN_37_/F___
GGAACCAGCCAATTTTAAATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

29._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

30._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

31._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

32._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

33._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

37._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

39._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

40._PA_107_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._LCT_EEN_37_/F

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

45._LCT_EEN_37_/F GC-08-160-4-03

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25