SNP Profiles matching PA150 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
17._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
18._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
19._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
20._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
21._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
22._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
23._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
24._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
25._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
26._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
27._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
28._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
29._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
30._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
31._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
32._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
33._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
34._RUQ_24
__AACCTT______TT________CTAG
35._RUQ_24
CCAGCCTTTTAATTTTCCCCAAGGCTAG
36._RUQ_6
__AACCTT______TT________CTAG
37._RUQ_1534
__AACCTT______TT________CTAG
38._EET_272_[ECU]
CTAA__TTTTAA__TT__CTAA__CTAG
39._RUQ_1231
__AACCTT______TT________CCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
17._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
18._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
19._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
20._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
21._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
22._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
23._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
24._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
25._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
26._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
27._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
28._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
29._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
30._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
31._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
32._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
33._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
34._RUQ_24
__________CCGG__CTAAGGGTCTCC
35._RUQ_24
CTAAGGCTCTCCGGAACTAAGGGTCTCC
36._RUQ_6
________TTCCGG__CTAAGGGTCTCC
37._RUQ_1534
________TTCCGG__CTAAGGGTCTCC
38._EET_272_[ECU]
CTAAGGCTCT__GGAACTAA__GTCT__
39._RUQ_1231
________TTCCGG__CTAAGGGTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
17._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
18._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
19._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
20._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
21._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
22._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
23._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
24._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
25._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
26._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
27._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
28._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
29._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
30._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
31._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
32._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
33._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
34._RUQ_24
AA__AACTAACCAACTGGAC____X_XX_X
35._RUQ_24
AAGGAACTAACCAACTGGACTTGGX_XX_X
36._RUQ_6
AA__AACTAACCAACTGGAC____X_XX_X
37._RUQ_1534
AA__AACTAACCAACTGGAC____X_XX_X
38._EET_272_[ECU]
AAAG__CTAACCAACT__AC__GGX_XX_X
39._RUQ_1231
AA__AACTAACCAACCGGAC____X_XX_X

Input profile: PA_150_[PER]

 
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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

3._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

4._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

5._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

8._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

9._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016

18._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

19._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

20._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

21._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

22._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

23._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

24._POUND_7_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

25._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

33._POUND_7_/B

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

34._POUND_7_/B RUQ_24

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._POUND_7_/B RUQ_24

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._EET_272_[ECU] RUQ_6

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._TRD_32 RUQ_1534

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._EET_272_[ECU]

95 %
30 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

39._LZ_8 RUQ_1231

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25