SNP Profiles matching SIAL 169

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGTTAATTCCAACCAACCAAGGAACCCT
1._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
2._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
3._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
4._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
5._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
6._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
7._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
8._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
9._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
10._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
11._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
12._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
13._GU_300_/P___
GGTTAATTCCAACCAACCAAGGAACCTT
14._GU_300___
GGTTAATTCCAACCAACCAAGGAACCTT
15._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
16._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
17._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
18._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
19._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
20._SIAL_88___
GGTTAATTCCAACCAACCAAGGAACCTT
21._CATONGO___
GGTTAATTCCAACCAACCAAGGAACCTT
22._AMAZ_5_/2___
GGTTCCTTCCAACCAACCAAGGAACCTT
23._CATONGO___
GGTTAATTCCAACCAACCAAGGAACCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTGGAATTAAGGGGCCTTGGAATTGGCC
1._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
2._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
3._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
4._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
5._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
6._GU_300_/P___
TTCCAATTGGGGGGCCTTGGAATTGGCC
7._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
8._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
9._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
10._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
11._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
12._GU_300___
TTCCAATTGGGGGGCCTTGGAATTGGCC
13._GU_300_/P___
TTCCAATTGGGGGGCC__GGAATTGGCC
14._GU_300___
TTCCAATTGGGGGGCC__GGAATTGGCC
15._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
16._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
17._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
18._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
19._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
20._SIAL_88___
TTCCAATTGGGGGGCCTTGGAATTGGCC
21._CATONGO___
TTCCAATTAAGGGGCCTTCCAATTGGCC
22._AMAZ_5_/2___
TTCCAATTAAGGGGCCTTGGAATTGGCC
23._CATONGO___
TTCCAATTAAGGGGCCTTCCAATTGGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAAATTCCTTCCAATTTTGGAGTTX_XX_X
1._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
2._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
3._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
4._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
5._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
6._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
7._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
8._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
9._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
10._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
11._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
12._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
13._GU_300_/P___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
14._GU_300___
AAAACTCCTTCCAATTCTGGAGTTX_XX_X
15._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
16._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
17._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
18._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
19._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
20._SIAL_88___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
21._CATONGO___
AAAATTCCTTCCAATTCCGGGGTTX_XX_X
22._AMAZ_5_/2___
AAAATTCCTTCCAATTCCGGAATTX_XX_X
23._CATONGO___
AAAATTCCTTCCAATTCCGGGGTTX_XX_X

Input profile: SIAL_169

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 6 > FP
 Dapeng Zhang, 2016

2._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 5 > FP
 Dapeng Zhang, 2016

3._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 9
 Dapeng Zhang, 2016

4._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 8
 Dapeng Zhang, 2016

5._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 3
 Dapeng Zhang, 2016

6._GU_300_/P

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 2
 Dapeng Zhang, 2016

7._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

10._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

11._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_300 GC-08-063-1-85

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._GU_300_/P

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8185 1 > FP
 Dapeng Zhang, 2016

14._GU_300 GC-08-063-1-85

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._SIAL_88 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._SIAL_88 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._SIAL_88 NA

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._SIAL_88 GC-01-052-3-07

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._SIAL_88 GC-01-052-3-07

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._CATONGO

90 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._AMAZ_5_/2

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

23._CATONGO

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D254 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520