SNP Profiles matching EET 399 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTCCGGGGCCAAGGAGACCT
1._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
2._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
3._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
4._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
5._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
6._EET_399_[ECU]___
GGATACGT__CCGGGGCCAAGGAGACCT
7._EET_399_[ECU]___
GGATACGT__CCGGGGCCAAGGAGACCT
8._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
9._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAG__CT
10._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAG__CT
11._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
12._EET_399_[ECU]___
GGATACGT__CCGGGGCCAAGGAGACCT
13._EET_399_[ECU]___
GGATACGT__CCGGGGCCAAGGAGACCT
14._EET_399_[ECU]___
GGATACGTCTCCGGGGCCAAGGAGACCT
15._EET_399_[ECU]___
____ACGTCTCCGGGGCCAA__AGACCT
16._EET_400_[ECU]___
GGATACGTCTCC__AGCCAAGGAGACCT
17._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
18._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
19._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
20._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
21._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
22._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
23._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
24._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
25._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
26._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
27._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
28._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
29._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
30._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
31._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
32._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
33._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
34._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
35._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
36._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
37._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
38._POUND_10_/B___
GGATACGTCTCCCCAGCTAAGGAGACCT
39._POUND_10_/B___
GGATACGTCTCCCCAGCT__GGAGACCT
40._POUND_10_/B___
GGATACGTCTCCCCAGCT__GGAGACCT
41._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
42._EET_400_[ECU]___
GGATACGTCTCCCCAGCTAAGGAGACCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGACCTAAGTCGCTCTCGAATTAACC
1._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
2._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
3._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
4._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
5._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
6._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
7._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
8._EET_399_[ECU]___
__GGACCTAAGTCGCTCTCGAATTAACC
9._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
10._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
11._EET_399_[ECU]___
__GGACCTAAGTCGCTCTCGAATTAACC
12._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
13._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
14._EET_399_[ECU]___
GGGGACCTAAGTCGCTCTCGAATTAACC
15._EET_399_[ECU]___
GGGGACCT__GTCGTT________AACC
16._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
17._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
18._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
19._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
20._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
21._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
22._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
23._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
24._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
25._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
26._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
27._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
28._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
29._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
30._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
31._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
32._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
33._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
34._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
35._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
36._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
37._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
38._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
39._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
40._POUND_10_/B___
GGGGACCTAAGGCGCTCTCGAATTAACC
41._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAACC
42._EET_400_[ECU]___
GGGGACCTAAGGCGCTCTCGAATTAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
1._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
2._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
3._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
4._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
5._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
6._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
7._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
8._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
9._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
10._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
11._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
12._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
13._EET_399_[ECU]___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
14._EET_399_[ECU]___
GGAACCCTGGTTACCTTTCCAGCCX_XX_X
15._EET_399_[ECU]___
________GG______TTCCAG__X_XX_X
16._EET_400_[ECU]___
GG____CTGTTTAC__TTCCAG__X_XX_X
17._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
18._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
19._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
20._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
21._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
22._EET_400_[ECU]___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
23._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
24._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
25._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
26._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
27._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
28._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
29._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
30._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
31._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
32._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
33._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
34._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
35._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
36._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
37._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
38._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
39._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
40._POUND_10_/B___
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
41._EET_400_[ECU]___
GGAACCCTGTTTACCTTTCCAGCCX_XX_X
42._EET_400_[ECU]___
GGAACCCTGTTTACCTTTCCAGCCX_XX_X

Input profile: UF_12

 
Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

6._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

10._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.3 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91.3 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

42._EET_400_[ECU] RUQ_760

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520