SNP Profiles matching EET 233A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
1._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
2._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
3._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
4._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
5._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
6._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
7._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
8._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
9._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
10._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
11._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
12._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
13._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
14._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
15._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
16._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
17._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
18._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
19._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCCAGTTAT
20._EET_233_[ECU]___
CTGGCCCTCCCTTTCCTTGGCTAGTTAT
21._EET_233_[ECU]___
__GGCCCT____________CCAG____
22._SJ_1_/40_[POU]___
__GGCGCT____________CCAG____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCTTGGGGAACTCCCGGTCTACAGAG
1._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
2._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
3._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
4._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
5._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
6._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
7._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
8._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
9._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
10._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
11._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
12._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
13._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
14._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
15._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
16._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
17._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
18._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
19._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
20._EET_233_[ECU]___
GGCCTTGGGGAACTCCCGGTCTACAGAG
21._EET_233_[ECU]___
____TTGGGG__CTCCGGGTCTACAG__
22._SJ_1_/40_[POU]___
____TTGGGG__CTCCCGGTCTACAG__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
1._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
2._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
3._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
4._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
5._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
6._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
7._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
8._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
9._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
10._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
11._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
12._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
13._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
14._EET_233_[ECU]___
TTCCAACCCCCTGTCC__CCX_XX_XX_XX_X
15._EET_233_[ECU]___
TTCC__CCCCCTGTCCAACCX_XX_XX_XX_X
16._EET_233_[ECU]___
TTCCAACCCCCTGT__AACCX_XX_XX_XX_X
17._EET_233_[ECU]___
TTCCAACCCCCTGTCC__CCX_XX_XX_XX_X
18._EET_233_[ECU]___
TTCCAACCCCCTGT__AACCX_XX_XX_XX_X
19._EET_233_[ECU]___
TTCC__CCCCCTGTCCAACCX_XX_XX_XX_X
20._EET_233_[ECU]___
TTCCAACCCCCTGTCCAACCX_XX_XX_XX_X
21._EET_233_[ECU]___
TTCCAACCCCCTGTCC____X_XX_XX_XX_X
22._SJ_1_/40_[POU]___
TTCCAACCCCTTGTCC____X_XX_XX_XX_X

Input profile: EET_233_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

1._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

2._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

3._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

4._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

5._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

6._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

7._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._EET_233_[ECU] GC-05-149-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

9._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

13._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

14._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

17._EET_233_[ECU] GC-05-149-4-02

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

19._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

20._EET_233_[ECU] RUQ_1517

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._EET_233_[ECU] RUQ_1517

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._SJ_1_/40_[POU] RUQ_1438

95.7 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25