SNP Profiles matching EET 233A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
1._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
2._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
3._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
4._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
5._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
6._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
7._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
8._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
9._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
10._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
11._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
12._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
13._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
14._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
15._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
16._EET_233_[ECU]___
CTGGCCCTCCCT__TTCCTTGGCCAGTT
17._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
18._EET_233_[ECU]___
CTGGCCCTCCCT__TTCCTTGGCCAGTT
19._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
20._EET_233_[ECU]___
CTGGCCCTCCCTGGTTCCTTGGCTAGTT
21._EET_233_[ECU]___
__GGCCCT____GG________CCAG__
22._SJ_1_/40_[POU]___
__GGCGCT____GT________CCAG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATGGCCTTGGGGAACTCCCGGTCTACAG
1._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
2._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
3._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
4._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
5._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
6._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
7._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
8._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
9._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
10._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
11._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
12._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
13._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
14._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
15._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
16._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
17._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
18._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
19._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
20._EET_233_[ECU]___
ATGGCCTTGGGGAACTCCCGGTCTACAG
21._EET_233_[ECU]___
______TTGGGG__CTCCGGGTCTACAG
22._SJ_1_/40_[POU]___
______TTGGGG__CTCCCGGTCTACAG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
1._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
2._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
3._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
4._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
5._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
6._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
7._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
8._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
9._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
10._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
11._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
12._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
13._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
14._EET_233_[ECU]___
AGTTCCAACCCCCTGT__CCX_XX_XX_XX_X
15._EET_233_[ECU]___
AGTTCC__CCCCCTGTAACCX_XX_XX_XX_X
16._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
17._EET_233_[ECU]___
AGTTCCAACCCCCTGT__CCX_XX_XX_XX_X
18._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
19._EET_233_[ECU]___
AGTTCC__CCCCCTGTAACCX_XX_XX_XX_X
20._EET_233_[ECU]___
AGTTCCAACCCCCTGTAACCX_XX_XX_XX_X
21._EET_233_[ECU]___
__TTCCAACCCCCTGT____X_XX_XX_XX_X
22._SJ_1_/40_[POU]___
__TTCCAACCCCTTGT____X_XX_XX_XX_X

Input profile: EET_233_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

1._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

2._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

3._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

4._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

5._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

6._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

7._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._EET_233_[ECU] GC-05-149-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

9._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

13._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

14._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

17._EET_233_[ECU] GC-05-149-4-02

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

19._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

20._EET_233_[ECU] RUQ_1517

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._EET_233_[ECU] RUQ_1517

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._SJ_1_/40_[POU] RUQ_1438

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP32 38TcSNP25