SNP Profiles matching EET 233

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
1._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
2._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
3._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
4._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
5._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
6._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
7._GC-05-085-2-36
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
8._GC-05-085-2-36
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
9._GC-05-085-2-36
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
10._GC-05-149-4-02
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
11._GC-05-178-4-31
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
12._GC-05-178-4-31
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
13._GC-05-178-4-31
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
14._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
15._EET_233_[ECU]
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
16._EET_233_[ECU]
CTGGCCCTCCCT__TTCCTTGGCCAGTT
17._GC-05-085-2-36
CTGGCCCTCCCT__TTCCTTGGCCAGTT
18._GC-05-085-2-36
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
19._GC-05-149-4-02
CTGGCCCTCCCTGGTTCCTTGGCCAGTT
20._RUQ_1517
CTGGCCCTCCCTGGTTCCTTGGCTAGTT
21._RUQ_1517
__GGCCCT____GG________CCAG__
22._RUQ_1438
__GGCGCT____GT________CCAG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATGGCCTTGGGGAACTCCCGGTCTACAG
1._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
2._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
3._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
4._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
5._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
6._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
7._GC-05-085-2-36
ATGGCCTTGGGGAACTCCCGGTCTACAG
8._GC-05-085-2-36
ATGGCCTTGGGGAACTCCCGGTCTACAG
9._GC-05-085-2-36
ATGGCCTTGGGGAACTCCCGGTCTACAG
10._GC-05-149-4-02
ATGGCCTTGGGGAACTCCCGGTCTACAG
11._GC-05-178-4-31
ATGGCCTTGGGGAACTCCCGGTCTACAG
12._GC-05-178-4-31
ATGGCCTTGGGGAACTCCCGGTCTACAG
13._GC-05-178-4-31
ATGGCCTTGGGGAACTCCCGGTCTACAG
14._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
15._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
16._EET_233_[ECU]
ATGGCCTTGGGGAACTCCCGGTCTACAG
17._GC-05-085-2-36
ATGGCCTTGGGGAACTCCCGGTCTACAG
18._GC-05-085-2-36
ATGGCCTTGGGGAACTCCCGGTCTACAG
19._GC-05-149-4-02
ATGGCCTTGGGGAACTCCCGGTCTACAG
20._RUQ_1517
ATGGCCTTGGGGAACTCCCGGTCTACAG
21._RUQ_1517
______TTGGGG__CTCCGGGTCTACAG
22._RUQ_1438
______TTGGGG__CTCCCGGTCTACAG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
1._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
2._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
3._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
4._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
5._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
6._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
7._GC-05-085-2-36
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
8._GC-05-085-2-36
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
9._GC-05-085-2-36
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
10._GC-05-149-4-02
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
11._GC-05-178-4-31
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
12._GC-05-178-4-31
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
13._GC-05-178-4-31
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
14._EET_233_[ECU]
AGTTCCCCCCCTGTCC__CCX_XX_XX_XX_X
15._EET_233_[ECU]
AGTTCCCCCCCTGT__AACCX_XX_XX_XX_X
16._EET_233_[ECU]
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
17._GC-05-085-2-36
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
18._GC-05-085-2-36
AGTTCCCCCCCTGT__AACCX_XX_XX_XX_X
19._GC-05-149-4-02
AGTTCCCCCCCTGTCC__CCX_XX_XX_XX_X
20._RUQ_1517
AGTTCCCCCCCTGTCCAACCX_XX_XX_XX_X
21._RUQ_1517
__TTCCCCCCCTGTCC____X_XX_XX_XX_X
22._RUQ_1438
__TTCCCCCCTTGTCC____X_XX_XX_XX_X

Input profile: EET_233_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

1._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

2._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

3._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

4._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

5._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

6._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

7._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

8._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

9._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._EET_233_[ECU] GC-05-149-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

11._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

17._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

18._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

19._EET_233_[ECU] GC-05-149-4-02

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._EET_233_[ECU] RUQ_1517

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._EET_233_[ECU] RUQ_1517

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._SJ_1_/40_[POU] RUQ_1438

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25