SNP Profiles matching SCA-19

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTAAGGGGCCCCCCCCGGTTCTTT
1._SCA_19___
AACCCTAAGGGGCCCCCCCCGGTTCT__
2._SCA_19___
AACCCTAAGGGGCCCCCCCCGGTTCTTT
3._SCA_19___
AACCCTAA________CCCCGG__CT__
4._SCA_19___
AACCCTAA________CCCCGG__CT__
5._SCA_19___
AACCCTAA________CCCCGG__CT__
6._POUND_25_/A___
AAACCTAA________CCCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACGGGGCGGGCTAATTGGTTAACCGG
1._SCA_19___
AAACGGGGCGGGCTAATTGGTTAACCGG
2._SCA_19___
AAACGGGGCGGGCTAATTGGTTAACCGG
3._SCA_19___
____GG____GG________TTAA__GG
4._SCA_19___
____GG____GG________TTAA__GG
5._SCA_19___
____GG____GG________TTAA__GG
6._POUND_25_/A___
____GG____GG________TTAA__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAGGTGGTTAACCGGCC
1._SCA_19___
AATTGGGGGGCCAGGTGGTTAACCGGCC
2._SCA_19___
AATTGGGGGGCCAGGTGGTTAACCGGCC
3._SCA_19___
AA______GG__AGGT____AA______
4._SCA_19___
AA______GG__AGGT____AA______
5._SCA_19___
AA______GG__AGGT____AA______
6._POUND_25_/A___
AA______GG__AGTT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAATTTTCCCC
1._SCA_19___
GGTTTTAGAGAACCCCGGAATTTTCCCC
2._SCA_19___
GGTTTTAGAGAACCCCGGAATTTTCCCC
3._SCA_19___
____TT__________________CCCC
4._SCA_19___
____TT__________________CCCC
5._SCA_19___
____TT__________________CCCC
6._POUND_25_/A___
____TT__________________CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
1._SCA_19___
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
2._SCA_19___
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
3._SCA_19___
____CG__TTAAGG__CCAGGGGT____
4._SCA_19___
____CG__TTAAGG__CCAGGGGT____
5._SCA_19___
____CG__TTAAGG__CCAGGGGT____
6._POUND_25_/A___
____CG__TTACGG__CCGGGGGT____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCCCAGCCACAACCCGCCATCCCC
1._SCA_19___
CCAACCCCAGCCACAACCCGCCATCCCC
2._SCA_19___
CCAACCCCAGCCACAACCCGCCAT__CC
3._SCA_19___
__AACC__________CCCG______CC
4._SCA_19___
__AACC__________CCCG______CC
5._SCA_19___
__AACC__________CCCG______CC
6._POUND_25_/A___
__AACC__________CCCG______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCTAACCCTGTTTTTGGX_XX_XX_XX_X
1._SCA_19___
CTCCCTAACCCTGTTTTTGGX_XX_XX_XX_X
2._SCA_19___
CTCCCTAACCCTGTTTTTGGX_XX_XX_XX_X
3._SCA_19___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
4._SCA_19___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
5._SCA_19___
CTCC__AA__CTGTTT____X_XX_XX_XX_X
6._POUND_25_/A___
TTCC__AA__CTGTTT____X_XX_XX_XX_X

Input profile: SCA_19 GC-03-004-1-04

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._SCA_19 GC-03-004-1-04

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._SCA_19 GC-03-004-1-04

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._SCA_19

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

4._SCA_19

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

5._SCA_19

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

6._POUND_25_/A

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F452 T9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240