SNP Profiles matching SCA 19

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTAAGGGGCCCCCCCCGGTTCTTT
1._GC-03-004-1-04
AACCCTAAGGGGCCCCCCCCGGTTCTTT
2._GC-03-004-1-04
AACCCTAAGGGGCCCCCCCCGGTTCT__
3._SCA_19
AACCCTAA________CCCCGG__CT__
4._SCA_19
AACCCTAA________CCCCGG__CT__
5._SCA_19
AACCCTAA________CCCCGG__CT__
6._POUND_25_/A
AAACCTAA________CCCCGG__CC__
7._GC-01-067-4-03
ATCCCTAAAGAGCTCTCCCTGGTTCTTT
8._GC-01-067-4-03
ATCCCTAAAGAGCTCTCCCTGGTTCTTT
9._GC-01-067-4-03
ATCCCTAAAGAGCTCTCCCTGGTTCTTT
10._RUQ_26
____CTAA____TT__CC____TTCC__
11._RUQ_804
____CTAA____TT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACGGGGCGGGCTAATTGGTTAACCGG
1._GC-03-004-1-04
AAACGGGGCGGGCTAATTGGTTAACCGG
2._GC-03-004-1-04
AAACGGGGCGGGCTAATTGGTTAACCGG
3._SCA_19
____GG____GG________TTAA__GG
4._SCA_19
____GG____GG________TTAA__GG
5._SCA_19
____GG____GG________TTAA__GG
6._POUND_25_/A
____GG____GG________TTAA__CG
7._GC-01-067-4-03
ATACGGGGCGGGCTAATTGGTTAACCCG
8._GC-01-067-4-03
ATACGGGGCGGGCTAATTGGTTAACCCG
9._GC-01-067-4-03
ATACGGGGCGGG__AATTGGTTAACCCG
10._RUQ_26
________CG________GG__AACCCG
11._RUQ_804
________CG________GG__AACCCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAGGTGGTTAACCGGCC
1._GC-03-004-1-04
AATTGGGGGGCCAGGTGGTTAACCGGCC
2._GC-03-004-1-04
AATTGGGGGGCCAGGTGGTTAACCGGCC
3._SCA_19
AA______GG__AGGT____AA______
4._SCA_19
AA______GG__AGGT____AA______
5._SCA_19
AA______GG__AGGT____AA______
6._POUND_25_/A
AA______GG__AGTT____AA______
7._GC-01-067-4-03
AATTGGGG__CCAAGTGGTTAGCCGGCC
8._GC-01-067-4-03
AATTGGGG__CCAAGTGGTTAGCCGGCC
9._GC-01-067-4-03
AATTGGGG__CCAAGTGGTTAGCCGGCC
10._RUQ_26
______GGCGCCAGGT____AACC____
11._RUQ_804
______GGCGCCAGGT____AACC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAATTTTCCCC
1._GC-03-004-1-04
GGTTTTAGAGAACCCCGGAATTTTCCCC
2._GC-03-004-1-04
GGTTTTAGAGAACCCCGGAATTTTCCCC
3._SCA_19
____TT__________________CCCC
4._SCA_19
____TT__________________CCCC
5._SCA_19
____TT__________________CCCC
6._POUND_25_/A
____TT__________________CCCC
7._GC-01-067-4-03
GGTTTTAGAGAACCCCGGAATTTTCCCC
8._GC-01-067-4-03
GGTTTTAGAGAACCCCGGAATTTTCCCC
9._GC-01-067-4-03
GGTTTTAGAGAACCCCGGAATTTTCCCC
10._RUQ_26
GGTT____AG____________CTCC__
11._RUQ_804
GGTT____AG____________CTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
1._GC-03-004-1-04
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
2._GC-03-004-1-04
TTGGCGCCTTAAGGGGCCAGGGGTGGTT
3._SCA_19
____CG__TTAAGG__CCAGGGGT____
4._SCA_19
____CG__TTAAGG__CCAGGGGT____
5._SCA_19
____CG__TTAAGG__CCAGGGGT____
6._POUND_25_/A
____CG__TTACGG__CCGGGGGT____
7._GC-01-067-4-03
TTGGCGCCTTAAGGGGCCAGGGGGGGCT
8._GC-01-067-4-03
TTGGCGCCTTAAGGGGCCAGGGGGGGCT
9._GC-01-067-4-03
TTGGCGCCTTAAGGGGCCAGGGGGGGCT
10._RUQ_26
TT__CGCCTTAC__GGCCGGGGGTGG__
11._RUQ_804
TT__CGCCTTAC__GGCCGGGGGTGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCCCAGCCACAACCCGCCATCCCT
1._GC-03-004-1-04
CCAACCCCAGCCACAACCCGCCATCCCT
2._GC-03-004-1-04
CCAACCCCAGCCACAACCCGCCATCCCT
3._SCA_19
__AACC__________CCCG____CCCT
4._SCA_19
__AACC__________CCCG____CCCT
5._SCA_19
__AACC__________CCCG____CCCT
6._POUND_25_/A
__AACC__________CCCG____CCTT
7._GC-01-067-4-03
CCAACCACAGCCACAACCGGCCATCCCT
8._GC-01-067-4-03
CCAACCACAGCCACAACCGGCCATCCCT
9._GC-01-067-4-03
CCAACCACAGCCACAACCGGCCATCCCT
10._RUQ_26
________________CCCG____CC__
11._RUQ_804
________________CCCG____CC__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACCCTGTTTTTGGX_XX_XX_XX_XX_X
1._GC-03-004-1-04
CCCTAACCCTGTTTTTGGX_XX_XX_XX_XX_X
2._GC-03-004-1-04
CCCTAACCCTGTTTTTGGX_XX_XX_XX_XX_X
3._SCA_19
CC__AA__CTGTTT____X_XX_XX_XX_XX_X
4._SCA_19
CC__AA__CTGTTT____X_XX_XX_XX_XX_X
5._SCA_19
CC__AA__CTGTTT____X_XX_XX_XX_XX_X
6._POUND_25_/A
CC__AA__CTGTTT____X_XX_XX_XX_XX_X
7._GC-01-067-4-03
CCTTAACCCTGGTTATGGX_XX_XX_XX_XX_X
8._GC-01-067-4-03
CCTTAACCCTGGTTATGGX_XX_XX_XX_XX_X
9._GC-01-067-4-03
CCTTAACCCTGGTTATGGX_XX_XX_XX_XX_X
10._RUQ_26
____AACCCTGT______X_XX_XX_XX_XX_X
11._RUQ_804
____AACCCTGT______X_XX_XX_XX_XX_X

Input profile: SCA_19 GC-03-004-1-04

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16