SNP Profiles matching LCT_EEN_46

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
1._LCT_EEN_46___
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
2._LCT_EEN_46___
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
3._LCT_EEN_46___
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
4._LCT_EEN_46___
TTCTCCAAAGTTCTCTCTAGTTCTCCAT
5._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
6._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
7._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
8._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
9._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
10._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
11._LCT_EEN_46___
TTCTCC________CTCTAG__CT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAGGGGGGGGTTAACTGGAAATCGGG
1._LCT_EEN_46___
ACAAGGGGGGGGTTAACTGGAAATCGGG
2._LCT_EEN_46___
ACAAGGGGGGGGTTAACTGGAAATCGGG
3._LCT_EEN_46___
ACAAGGGGGGGGTTAACTGGAAATCGGG
4._LCT_EEN_46___
ACAAGGGGGGGGTTAACTGGAAATCGGG
5._LCT_EEN_46___
____GG____GG________AAAT__GG
6._LCT_EEN_46___
____GG____GG________AAAT__GG
7._LCT_EEN_46___
____GG____GG________AAAT__GG
8._LCT_EEN_46___
____GG____GG________AAAT__GG
9._LCT_EEN_46___
____GG____GG________AAAT__GG
10._LCT_EEN_46___
____GG____GG________AAAT__GG
11._LCT_EEN_46___
____GG____GG________AAAT__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTTTAGCCCCAATTGGTTAGTTGGCC
1._LCT_EEN_46___
AATTTTAGCCCCAATTGGTTAGTTGGCC
2._LCT_EEN_46___
AATTTTAGCCCCAATTGGTTAGTTGGCC
3._LCT_EEN_46___
AATTTTAGCCCCAATTGGTTAGTTGGCC
4._LCT_EEN_46___
AATTTTAGCCCCAATTGGTTAGTTGGCC
5._LCT_EEN_46___
AA______CC__AATT____AG______
6._LCT_EEN_46___
AA______CC__AATT____AG______
7._LCT_EEN_46___
AA______CC__AATT____AG______
8._LCT_EEN_46___
AA______CC__AATT____AG______
9._LCT_EEN_46___
AA______CC__AATT____AG______
10._LCT_EEN_46___
AA______CC__AATT____AG______
11._LCT_EEN_46___
AA______CC__AATT____AG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACTACGGGGTTTTCCTT
1._LCT_EEN_46___
GGTTCTAAGGAACTACGGGGTTTTCCTT
2._LCT_EEN_46___
GGTTCTAAGGAACTACGGGGTTTTCCTT
3._LCT_EEN_46___
GGTTCTAAGGAACTACGGGGTTTTCCTT
4._LCT_EEN_46___
GGTTCTAAGGAACTACGGGGTTTTCCTT
5._LCT_EEN_46___
____CT__________________CCTT
6._LCT_EEN_46___
____CT__________________CCTT
7._LCT_EEN_46___
____CT__________________CCTT
8._LCT_EEN_46___
____CT__________________CCTT
9._LCT_EEN_46___
____CT__________________CCTT
10._LCT_EEN_46___
____CT__________________CCTT
11._LCT_EEN_46___
____CT__________________CCTT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTCCCCAAACAAGTGGAGTT
1._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
2._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
3._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
4._LCT_EEN_46___
TTGGCCCCTTCCCCAAACAAGTGGAGTT
5._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
6._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
7._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
8._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
9._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
10._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
11._LCT_EEN_46___
____CC__TTCCCC__ACAAGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACGGAAACAAAACGCCAACCTT
1._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
2._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
3._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
4._LCT_EEN_46___
CCAACTACGGAAACAAAACGCCAACCTT
5._LCT_EEN_46___
__AACT__________AACG______TT
6._LCT_EEN_46___
__AACT__________AACG______TT
7._LCT_EEN_46___
__AACT__________AACG______TT
8._LCT_EEN_46___
__AACT__________AACG______TT
9._LCT_EEN_46___
__AACT__________AACG______TT
10._LCT_EEN_46___
__AGCT__________AACG______TT
11._LCT_EEN_46___
__AGCT__________AACG______TT
 85 86 87 88 89 90 91 92 93      
_Input profile
TTCCAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
1._LCT_EEN_46___
TTCCAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
2._LCT_EEN_46___
TTCCAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
3._LCT_EEN_46___
TTCCAGTTCCGTCCAAGGX_XX_XX_XX_XX_X
4._LCT_EEN_46___
TTCCAGTTCC__CCAAGGX_XX_XX_XX_XX_X
5._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X
6._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X
7._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X
8._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X
9._LCT_EEN_46___
TTCCAG__CC__CC____X_XX_XX_XX_XX_X
10._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X
11._LCT_EEN_46___
TTCCAG__CCGTCC____X_XX_XX_XX_XX_X

Input profile: LCT_EEN_46 GC-03-033-3-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

6._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

7._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

8._LCT_EEN_46

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

9._LCT_EEN_46

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240