SNP Profiles matching EET-233

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTCTTT
1._GC-05-149-4-02
TTCTCCAAAATTTTCCTTAGTTTTCTTT
2._GC-05-178-4-31
TTCTCCAAAATTTTCCTTAGTTTTCTTT
3._GC-05-149-4-02
TTCTCCAAAATTTTCCTTAGTTTTCTTT
4._GC-05-178-4-31
TTCTCCAAAATTTTCCTTAGTTTTCTTT
5._GC-05-178-4-31
TTCTCCAAAATTTTCCTTAGTTTTCTTT
6._GC-05-085-2-36
TTCTCCAAAATTTTCCTTAGTTTTCTTT
7._GC-05-085-2-36
TTCTCCAAAATTTTCCTTAGTTTTCTTT
8._GC-05-085-2-36
TTCTCCAAAATTTTCCTTAGTTTTCTTT
9._GC-05-085-2-36
TTCTCCAAAATTTTCCTTAGTTTTCTTT
10._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
11._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
12._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
13._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
14._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
15._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
16._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
17._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
18._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
19._EET_233_[ECU]
TTCTCC________CCTTAG__TT____
20._RUQ_1517
__CTCC____TT__CC____TTTT____
21._RUQ_1517
TTCTCC________CTTTAG__TT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGGGCCAACCGGAATTCCGG
1._GC-05-149-4-02
AAAAGGCCGGGGCCAACCGGAATTCCGG
2._GC-05-178-4-31
AAAAGGCCGGGGCCAACCGGAATTCCGG
3._GC-05-149-4-02
AAAAGGCCGGGGCCAACCGG__TTCCGG
4._GC-05-178-4-31
AAAAGGCCGGGGCCAACCGGAATTCCGG
5._GC-05-178-4-31
AAAAGGCCGGGGCCAACCGGAATTCCGG
6._GC-05-085-2-36
AAAAGGCCGGGGCCAACCGGAATTCCGG
7._GC-05-085-2-36
AAAAGGCCGGGGCCAACCGGAATTCCGG
8._GC-05-085-2-36
AAAAGGCCGGGGCCAACCGGAATTCCGG
9._GC-05-085-2-36
AAAAGGCCGGGGCCAACCGGAATTCCGG
10._EET_233_[ECU]
____GG____GG________AATT__GG
11._EET_233_[ECU]
____GG____GG________AATT__GG
12._EET_233_[ECU]
____GG____GG________AATT__GG
13._EET_233_[ECU]
____GG____GG________AATT__GG
14._EET_233_[ECU]
____GG____GG________AATT__GG
15._EET_233_[ECU]
____GG____GG________AATT__GG
16._EET_233_[ECU]
____GG____GG__________TT__GG
17._EET_233_[ECU]
____GG____GG________AATT__GG
18._EET_233_[ECU]
____GG____GG________AATT__GG
19._EET_233_[ECU]
____GG____GG________AATT__GG
20._RUQ_1517
________GG________GG__TTCCGG
21._RUQ_1517
____GG____GG________AATT__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTTTAGCGACAGGTGGTTGGCTGGGG
1._GC-05-149-4-02
ATTTTTAGCGACAGGTGGTTGGCTGGGG
2._GC-05-178-4-31
ATTTTTAGCGACAGGTGGTTGGCTGGGG
3._GC-05-149-4-02
ATTTTTAGCGACAGGTGGTTGGCTGGGG
4._GC-05-178-4-31
ATTTTTAGCGACAGGTGGTTGGCTGGGG
5._GC-05-178-4-31
ATTTTTAGCGACAGGTGGTTGGCTGGGG
6._GC-05-085-2-36
ATTTTTAGCGACAGGTGGTTGGCTGGGG
7._GC-05-085-2-36
ATTTTTAGCGACAGGTGGTTGGCTGGGG
8._GC-05-085-2-36
ATTTTTAGCGACAGGTGGTTGGCTGGGG
9._GC-05-085-2-36
ATTTTTAGCGACAGGTGGTTGGCTGG__
10._EET_233_[ECU]
AT______CG__AGGT____GG______
11._EET_233_[ECU]
AT______CG__AGGT____GG______
12._EET_233_[ECU]
AT______CG__AGGT____GG______
13._EET_233_[ECU]
AT______CG__AGGT____GG______
14._EET_233_[ECU]
AT______CG__AGGT____GG______
15._EET_233_[ECU]
AT______CG__AGGT____GG______
16._EET_233_[ECU]
AT______CG__AGGT____GG______
17._EET_233_[ECU]
AT______CG__AGGT____GG______
18._EET_233_[ECU]
AT______CG__AGGT____GG______
19._EET_233_[ECU]
AT______CG__AGGT____GG______
20._RUQ_1517
______AGGGACAGGT____GGCT____
21._RUQ_1517
AT______CG__AGGT____GG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAGAGAACCGGAGTTTTCTCTTT
1._GC-05-149-4-02
GGTTCTAGAGAACCGGAGTTTTCTCTTT
2._GC-05-178-4-31
GGTTCTAGAGAACCGGAGTTTTCTCTTT
3._GC-05-149-4-02
GGTTCTAGAGAACCGGAGTTTTCTCTTT
4._GC-05-178-4-31
GGTTCTAGAGAACCGGAGTT__CTCTTT
5._GC-05-178-4-31
GGTTCTAGAGAACCGGAGTTTTCTCTTT
6._GC-05-085-2-36
GGTTCTAGAGAACCGG__TTTTCTCTTT
7._GC-05-085-2-36
GGTTCTAG__AACCGGAGTTTTCTCTTT
8._GC-05-085-2-36
GGTTCTAGAGAACCGGAGTTTTCTCTTT
9._GC-05-085-2-36
GGTTCTAGAGAACCGGAGTTTTCTCTTT
10._EET_233_[ECU]
____CT________________CTCT__
11._EET_233_[ECU]
____CT________________CTCT__
12._EET_233_[ECU]
____CT________________CTCT__
13._EET_233_[ECU]
____CT________________CTCT__
14._EET_233_[ECU]
____CT________________CTCT__
15._EET_233_[ECU]
____CT________________CTCT__
16._EET_233_[ECU]
____CT________________CTCT__
17._EET_233_[ECU]
____CT________________CTCT__
18._EET_233_[ECU]
____CT________________CTCT__
19._EET_233_[ECU]
____CT________________CTCT__
20._RUQ_1517
GGTT____AG__________TTCT__TT
21._RUQ_1517
____CT________________CTCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
1._GC-05-149-4-02
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
2._GC-05-178-4-31
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
3._GC-05-149-4-02
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
4._GC-05-178-4-31
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
5._GC-05-178-4-31
__CCCCCTCCCCGGCCAAGTGGAGTTCC
6._GC-05-085-2-36
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
7._GC-05-085-2-36
GGCCCCCTCCCCGGCCAAGTGGAGTTCC
8._GC-05-085-2-36
GGCCCCCTCCCCGG__AAGTGGAGTTCC
9._GC-05-085-2-36
GGCCCCCTCCCCGGCC__GTGGAGTTCC
10._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
11._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
12._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
13._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
14._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
15._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
16._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
17._EET_233_[ECU]
__CC__CTCCCC__CC__GTGG______
18._EET_233_[ECU]
__CC__CTCCCC____AAGTGG______
19._EET_233_[ECU]
__CC__CTCCCC__CCAAGTGG______
20._RUQ_1517
__CCCCCTCC__GGCCAAGTGGAG____
21._RUQ_1517
__CC__CTCCCC__CCAAGTGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGAAACAGACCCCCAAACCTTT
1._GC-05-149-4-02
AACCCCGGAAACAGACCCCCAAACCTTT
2._GC-05-178-4-31
AACCCCGGAAACAGACCCCCAAACCTTT
3._GC-05-149-4-02
AACCCCGGAAACAGACCCCCAAACCTTT
4._GC-05-178-4-31
AACCCCGGAAACAGACCCCCAAACCTTT
5._GC-05-178-4-31
AACCCCGGAAACAGACCCCCAAACCTTT
6._GC-05-085-2-36
AACCCCGGAAACAGACCCCCAAACCTTT
7._GC-05-085-2-36
AACCCCGGAAACAGACCCCCAA__CTTT
8._GC-05-085-2-36
AACCCCGGAAACAGACCCCCAA__CTTT
9._GC-05-085-2-36
AACCCCGGAAACAGACCCCCAAACCTTT
10._EET_233_[ECU]
AACC__________ACCC______CTTT
11._EET_233_[ECU]
AACC__________ACCC______CTTT
12._EET_233_[ECU]
AACC__________ACCC______CTTT
13._EET_233_[ECU]
AACC__________ACCC______CTTT
14._EET_233_[ECU]
AACC__________ACCC______CTTT
15._EET_233_[ECU]
AACC__________ACCC______CTTT
16._EET_233_[ECU]
AACC__________ACCC______CTTT
17._EET_233_[ECU]
AACC__________ACCC______CTTT
18._EET_233_[ECU]
AACC__________ACCC______CTTT
19._EET_233_[ECU]
AACC__________ACCC______CTTT
20._RUQ_1517
______________ACCC____ACCT__
21._RUQ_1517
AACC__________ACCC______CTTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
1._GC-05-149-4-02
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
2._GC-05-178-4-31
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
3._GC-05-149-4-02
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
4._GC-05-178-4-31
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
5._GC-05-178-4-31
CCTTAGCTCCGGCCATGGX_XX_XX_XX_XX_X
6._GC-05-085-2-36
CCTTAGCTCC__CC____X_XX_XX_XX_XX_X
7._GC-05-085-2-36
CCTTAGCTCCGGCC____X_XX_XX_XX_XX_X
8._GC-05-085-2-36
CCTTAGCTCCGGCC____X_XX_XX_XX_XX_X
9._GC-05-085-2-36
CCTTAGCTCCGGCC____X_XX_XX_XX_XX_X
10._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
11._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
12._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
13._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
14._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
15._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
16._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
17._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
18._EET_233_[ECU]
CC__AG__CCGGCC____X_XX_XX_XX_XX_X
19._EET_233_[ECU]
CC__AG__CC__CC____X_XX_XX_XX_XX_X
20._RUQ_1517
____AG__CCGG______X_XX_XX_XX_XX_X
21._RUQ_1517
CC__AG__CCGGCC____X_XX_XX_XX_XX_X

Input profile: EET_233_[ECU] GC-05-085-2-36

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._EET_233_[ECU] GC-05-149-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._EET_233_[ECU] GC-05-178-4-31

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._EET_233_[ECU] GC-05-149-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_233_[ECU] GC-05-178-4-31

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._EET_233_[ECU] GC-05-178-4-31

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

7._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

8._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

9._EET_233_[ECU] GC-05-085-2-36

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

10._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

12._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

13._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

14._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

17._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

18._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

19._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

20._EET_233_[ECU] RUQ_1517

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_233_[ECU] RUQ_1517

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240