SNP Profiles matching EET 233A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTCTTT
1._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
2._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
3._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
4._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
5._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
6._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
7._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
8._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
9._EET_233_[ECU]___
TTCTCCAAAATTTTCCTTAGTTTTCTTT
10._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
11._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
12._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
13._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
14._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
15._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
16._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
17._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
18._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
19._EET_233_[ECU]___
TTCTCC________CCTTAG__TT____
20._EET_233_[ECU]___
__CTCC____TT__CC____TTTT____
21._EET_233_[ECU]___
TTCTCC________CTTTAG__TT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGGGCCAACCGGAATTCCGG
1._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
2._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
3._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGG__TTCCGG
4._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
5._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
6._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
7._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
8._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
9._EET_233_[ECU]___
AAAAGGCCGGGGCCAACCGGAATTCCGG
10._EET_233_[ECU]___
____GG____GG________AATT__GG
11._EET_233_[ECU]___
____GG____GG________AATT__GG
12._EET_233_[ECU]___
____GG____GG________AATT__GG
13._EET_233_[ECU]___
____GG____GG________AATT__GG
14._EET_233_[ECU]___
____GG____GG________AATT__GG
15._EET_233_[ECU]___
____GG____GG________AATT__GG
16._EET_233_[ECU]___
____GG____GG__________TT__GG
17._EET_233_[ECU]___
____GG____GG________AATT__GG
18._EET_233_[ECU]___
____GG____GG________AATT__GG
19._EET_233_[ECU]___
____GG____GG________AATT__GG
20._EET_233_[ECU]___
________GG________GG__TTCCGG
21._EET_233_[ECU]___
____GG____GG________AATT__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTTTAGCGACAGGTGGTTGGCTGGGG
1._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
2._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
3._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
4._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
5._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
6._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
7._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
8._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGGGG
9._EET_233_[ECU]___
ATTTTTAGCGACAGGTGGTTGGCTGG__
10._EET_233_[ECU]___
AT______CG__AGGT____GG______
11._EET_233_[ECU]___
AT______CG__AGGT____GG______
12._EET_233_[ECU]___
AT______CG__AGGT____GG______
13._EET_233_[ECU]___
AT______CG__AGGT____GG______
14._EET_233_[ECU]___
AT______CG__AGGT____GG______
15._EET_233_[ECU]___
AT______CG__AGGT____GG______
16._EET_233_[ECU]___
AT______CG__AGGT____GG______
17._EET_233_[ECU]___
AT______CG__AGGT____GG______
18._EET_233_[ECU]___
AT______CG__AGGT____GG______
19._EET_233_[ECU]___
AT______CG__AGGT____GG______
20._EET_233_[ECU]___
______AGGGACAGGT____GGCT____
21._EET_233_[ECU]___
AT______CG__AGGT____GG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAGAGAACCACGGAGTTTTCTCT
1._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTTTTCTCT
2._EET_233_[ECU]___
GGTTCTAGAGAACC__GGAGTTTTCTCT
3._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTTTTCTCT
4._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTT__CTCT
5._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTTTTCTCT
6._EET_233_[ECU]___
GGTTCTAGAGAACCACGG__TTTTCTCT
7._EET_233_[ECU]___
GGTTCTAG__AACCACGGAGTTTTCTCT
8._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTTTTCTCT
9._EET_233_[ECU]___
GGTTCTAGAGAACCACGGAGTTTTCTCT
10._EET_233_[ECU]___
____CT__________________CTCT
11._EET_233_[ECU]___
____CT__________________CTCT
12._EET_233_[ECU]___
____CT__________________CTCT
13._EET_233_[ECU]___
____CT__________________CTCT
14._EET_233_[ECU]___
____CT__________________CTCT
15._EET_233_[ECU]___
____CT__________________CTCT
16._EET_233_[ECU]___
____CT__________________CTCT
17._EET_233_[ECU]___
____CT__________________CTCT
18._EET_233_[ECU]___
____CT__________________CTCT
19._EET_233_[ECU]___
____CT__________________CTCT
20._EET_233_[ECU]___
GGTT____AG____________TTCT__
21._EET_233_[ECU]___
____CT__________________CTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
1._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
2._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
3._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
4._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
5._EET_233_[ECU]___
TT__CCCCCTCCCCGGCCAAGTGGAGTT
6._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
7._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCCAAGTGGAGTT
8._EET_233_[ECU]___
TTGGCCCCCTCCCCGG__AAGTGGAGTT
9._EET_233_[ECU]___
TTGGCCCCCTCCCCGGCC__GTGGAGTT
10._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
11._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
12._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
13._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
14._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
15._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
16._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
17._EET_233_[ECU]___
____CC__CTCCCC__CC__GTGG____
18._EET_233_[ECU]___
____CC__CTCCCC____AAGTGG____
19._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
20._EET_233_[ECU]___
TT__CCCCCTCC__GGCCAAGTGGAG__
21._EET_233_[ECU]___
____CC__CTCCCC__CCAAGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCCCGGAAACAGACCCCCAAACCT
1._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
2._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
3._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
4._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
5._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
6._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
7._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAA__CT
8._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAA__CT
9._EET_233_[ECU]___
CCAACCCCGGAAACAGACCCCCAAACCT
10._EET_233_[ECU]___
__AACC__________ACCC______CT
11._EET_233_[ECU]___
__AACC__________ACCC______CT
12._EET_233_[ECU]___
__AACC__________ACCC______CT
13._EET_233_[ECU]___
__AACC__________ACCC______CT
14._EET_233_[ECU]___
__AACC__________ACCC______CT
15._EET_233_[ECU]___
__AACC__________ACCC______CT
16._EET_233_[ECU]___
__AACC__________ACCC______CT
17._EET_233_[ECU]___
__AACC__________ACCC______CT
18._EET_233_[ECU]___
__AACC__________ACCC______CT
19._EET_233_[ECU]___
__AACC__________ACCC______CT
20._EET_233_[ECU]___
________________ACCC____ACCT
21._EET_233_[ECU]___
__AACC__________ACCC______CT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
1._EET_233_[ECU]___
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
2._EET_233_[ECU]___
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
3._EET_233_[ECU]___
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
4._EET_233_[ECU]___
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
5._EET_233_[ECU]___
TTCCTTAGCTCCGGCCATGGX_XX_XX_XX_X
6._EET_233_[ECU]___
TTCCTTAGCTCC__CC____X_XX_XX_XX_X
7._EET_233_[ECU]___
TTCCTTAGCTCCGGCC____X_XX_XX_XX_X
8._EET_233_[ECU]___
TTCCTTAGCTCCGGCC____X_XX_XX_XX_X
9._EET_233_[ECU]___
TTCCTTAGCTCCGGCC____X_XX_XX_XX_X
10._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
11._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
12._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
13._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
14._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
15._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
16._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
17._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
18._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X
19._EET_233_[ECU]___
TTCC__AG__CC__CC____X_XX_XX_XX_X
20._EET_233_[ECU]___
______AG__CCGG______X_XX_XX_XX_X
21._EET_233_[ECU]___
TTCC__AG__CCGGCC____X_XX_XX_XX_X

Input profile: EET_233_[ECU] GC-05-149-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

1._EET_233_[ECU] GC-05-178-4-31

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._EET_233_[ECU] GC-05-085-2-36

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._EET_233_[ECU] GC-05-149-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_233_[ECU] GC-05-178-4-31

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._EET_233_[ECU] GC-05-178-4-31

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_233_[ECU] GC-05-085-2-36

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

7._EET_233_[ECU] GC-05-085-2-36

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

8._EET_233_[ECU] GC-05-085-2-36

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL3
Notes: PL3 FP3
 Mars, 2018

9._EET_233_[ECU] GC-05-085-2-36

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 36, Tree: PL5
Notes: PL5 FP4
 Mars, 2018

10._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 3 > FP
 Dapeng Zhang, 2016

11._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 5
 Dapeng Zhang, 2016

12._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5431 4
 Dapeng Zhang, 2016

13._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 1 > FP
 Dapeng Zhang, 2016

14._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 4
 Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 2 > FP
 Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5402 2
 Dapeng Zhang, 2016

17._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 5 > FP
 Dapeng Zhang, 2016

18._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 3 > FP
 Dapeng Zhang, 2016

19._EET_233_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5236 1 > FP
 Dapeng Zhang, 2016

20._EET_233_[ECU] RUQ_1517

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_233_[ECU] RUQ_1517

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240