SNP Profiles matching ICS 9

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCCCAGAGCTCCCCCTGGCCCCCT
1._NA
AAAACCCCAGAGCTCCCCCTGGCCCCCT
2._NA
AAAACCCCAGAGCTCCCCCTGGCCCCCT
3._NA
AAAACCCCAGAGCTCCCCCTGGCCCCCT
4._ICS_9
AAAACCCC________CCCTGG__CC__
5._ICS_9
AAAACCCC________CCCTGG__CC__
6._ICS_9
AAAACCCC________CCCTGG__CC__
7._ICS_9
AAAACCCC________CCCTGG__CC__
8._ICS_9
AAAACCCC________CCCTGG__CC__
9._ICS_9
AAAACCCC________CCCTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGGGGGCTGGTTAGATATCG
1._NA
ATCCAAAAGGGGGGCTGGTTAGATATCG
2._NA
ATCCAAAAGGGGGGCTGGTTAGATATCG
3._NA
ATCCAAAAGGGGGGCTGGTTAGATATCG
4._ICS_9
______AA____GG________ATAT__
5._ICS_9
______AA____GG________ATAT__
6._ICS_9
______AA____GG________ATAT__
7._ICS_9
______AA____GG________ATAT__
8._ICS_9
______AA____GG________ATAT__
9._ICS_9
______AA____GG________ATAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAACTGGAGCCACAATTGGGTAGCTAA
1._NA
GGAACTGGAGCCACAATTGGGTAGCTAA
2._NA
GGAACTGGAGCCACAATTGGGTAGCTAA
3._NA
GGAACTGGAGCCACAATTGGGTAGCTAA
4._ICS_9
GGAA______CC__AATT____AG____
5._ICS_9
GGAA______CC__AATT____AG____
6._ICS_9
GGAA______CC__AATT____AG____
7._ICS_9
GGAA______CC__AATT____AG____
8._ICS_9
GGAA______CC__AATT____AG____
9._ICS_9
GGAA______CC__AATT____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAAAGAGGGCTCCGGGGGTCTCTGG
1._NA
CCTTAAAGAGGGCTCCGGGGGTCTCTGG
2._NA
CCTTAAAGAGGGCTCCGGGGGTCTCTGG
3._NA
CCTTAAAGAGGGCTCCGGGGGTCT__GG
4._ICS_9
______________________CTCT__
5._ICS_9
______________________CTCT__
6._ICS_9
______________________CTCT__
7._ICS_9
______________________CT____
8._ICS_9
______________________CTCT__
9._ICS_9
______________________CTCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGCTCTACGGAGCCAGTTGTGGCTCC
1._NA
AAGGCTCTACGGAGCCAGTTGTGGCTCC
2._NA
AAGGCTCTACGGAGCCAGTTGTGGCTCC
3._NA
AAGGCTCTACGGAGCCAGTTGTGGCTCC
4._ICS_9
__GG__CTACGG__CCAGTTGT______
5._ICS_9
__GG__CTACGG__CCAGTTGT______
6._ICS_9
__GG__CTACGG__CCAGTTGT______
7._ICS_9
__GG__CTACGG__CCAGTTGT______
8._ICS_9
__GG__CTACGG__CCAGTTGT______
9._ICS_9
__GG__CTACGG__CCAGTTGT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACGGCCAAGGCCCGCCAACCTTCT
1._NA
GGTTACGGCCAAGGCCCGCCAACCTTCT
2._NA
GGTTACGGCCAAGGCCCGCCAACCTTCT
3._NA
GGTTACGGCCAAGGCCCGCCAACCTTCT
4._ICS_9
GGTT__________CCCG______TTCT
5._ICS_9
GGTT__________CCCG______TTCT
6._ICS_9
GGTT__________CCCG______TTCT
7._ICS_9
GGTT__________CCCG______TTCT
8._ICS_9
AATT__________CCGG______TTCT
9._ICS_9
AATT__________CCGG______TTCT
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTGGCTCTGTTTTTGGX_XX_XX_XX_XX_X
1._NA
CTTTGGCTCTGTTTTTGGX_XX_XX_XX_XX_X
2._NA
CTTTGGCTCTGTTTTTGGX_XX_XX_XX_XX_X
3._NA
CTTTGGCTCTGTTTTTGGX_XX_XX_XX_XX_X
4._ICS_9
CT__GG__CTGTTT____X_XX_XX_XX_XX_X
5._ICS_9
CT__GG__CTGTTT____X_XX_XX_XX_XX_X
6._ICS_9
CT__GG__CTGTTT____X_XX_XX_XX_XX_X
7._ICS_9
CT__GG__CTGTTT____X_XX_XX_XX_XX_X
8._ICS_9
CT__GG__CTGTCT____X_XX_XX_XX_XX_X
9._ICS_9
CT__GG__CTGTCT____X_XX_XX_XX_XX_X

Input profile: ICS_9 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._ICS_9 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_9 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._ICS_9 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._ICS_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 6
 Dapeng Zhang, 2016

5._ICS_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 4
 Dapeng Zhang, 2016

6._ICS_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 1
 Dapeng Zhang, 2016

7._ICS_9

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 7
 Dapeng Zhang, 2016

8._ICS_9

94.9 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

9._ICS_9

94.9 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240