SNP Profiles of JA 9 /37 [POU]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._JA 9 /37 [POU]___
GGGGTTGGCCTTCCCCCCTTCCAAGGAA
2._JA 9 /37 [POU]___
CGGTATGGCCTTCCCTACGTCTAAGGAC
3._JA 9 /37 [POU]___
GGGGTTGGCCTTCCCCCCTTCCAAGGAA
4._JA 9 /37 [POU]___
GGGGTTGGCCTTCCCCCCTTCCAAGGAA
5._JA 9 /37 [POU]___
GGGGTTGGCCTTCCCCCCTTCCAAGGAA
6._JA 9 /37 [POU]___
GGCCTTGGGGAACCGGCCAAGGTTGGAA
7._JA 9 /37 [POU]___
GG___TT_______________CCTTCC______AA
8._JA 9 /37 [POU]___
GG___TT_______________CCTTCC______AA
9._JA 9 /37 [POU]___
GG___TT_______________CCTTCC______AA
10._JA 9 /37 [POU]___
GG___TT_______________CCTTCC______AA
11._JA 9 /37 [POU]___
CG___AT_______________ACGTCT______AC
12._JA 9 /37 [POU]___
GG___TT_______________CCTTCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._JA 9 /37 [POU]___
CCAAGGCCAAGGGGAATTGGGGTTCCAA
2._JA 9 /37 [POU]___
CCAGGGCTAAGGGGAACTAGGGATCGAG
3._JA 9 /37 [POU]___
CCAAGGCCAAGGGGAATTGGGGTTCCAA
4._JA 9 /37 [POU]___
CCAAGGCCAAGGGGAATTGGGGTTCCAA
5._JA 9 /37 [POU]___
CCAAGGCCAAGGGGAATTGGGGTTCCAA
6._JA 9 /37 [POU]___
GGAAGGGGTTGGGGAAAAGGGGTTGG___
7._JA 9 /37 [POU]___
CCAA___CC_________AA______GG______AA
8._JA 9 /37 [POU]___
CCAA___CC_________AA______GG______AA
9._JA 9 /37 [POU]___
CCAA___CC_________AA______GG______AA
10._JA 9 /37 [POU]___
CCAA___CC_________AA______GG______AA
11._JA 9 /37 [POU]___
CCAG___CT_________AA______GG______AG
12._JA 9 /37 [POU]___
CCAG___CC_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._JA 9 /37 [POU]___
___CCCCTTGGTTAACCAATTAATTGGAA
2._JA 9 /37 [POU]___
___ACCCTTAGGTAGCCAACTAATTGGAA
3._JA 9 /37 [POU]___
___CCCCTTGGTTAACCAATTAATTGGAA
4._JA 9 /37 [POU]___
___CCCCTTGGTTAACCAATTAATTGGAA
5._JA 9 /37 [POU]___
___CCCCTTGGTTAACCAATTAATTGGAA
6._JA 9 /37 [POU]___
AACCCC___GGAAAACCAAAA___AA___GG
7._JA 9 /37 [POU]___
______CCTT___TT___CCAA______TTGG___
8._JA 9 /37 [POU]___
______CCTT___TT___CCAA______TTGG___
9._JA 9 /37 [POU]___
______CCTT___TT___CCAA______TTGG___
10._JA 9 /37 [POU]___
______CCTT___TT___CCAA______TTGG___
11._JA 9 /37 [POU]___
______CCTT___GT___CCAA______TTGG___
12._JA 9 /37 [POU]___
______CCTT___TT___CCCC______CTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._JA 9 /37 [POU]___
AATTCCGGGGTTTTTTAAGG___GGCCCC
2._JA 9 /37 [POU]___
AGCTCTGTAGTTGTTTACGGAACGCCCT
3._JA 9 /37 [POU]___
AATTCCGGGGTTTTTTAAGG___GGCCCC
4._JA 9 /37 [POU]___
AATTCCGGGGTTTTTTAAGG___GGCCCC
5._JA 9 /37 [POU]___
___TTCCGGGGTTTTTTAAGG___GGCCCC
6._JA 9 /37 [POU]___
AA______CCGGAAAAAAAACCGGCC___GG
7._JA 9 /37 [POU]___
_________GG_____________________GG___CC
8._JA 9 /37 [POU]___
_________GG_____________________GG___CC
9._JA 9 /37 [POU]___
_________GG_____________________GG___CC
10._JA 9 /37 [POU]___
_________GG_____________________GG___CC
11._JA 9 /37 [POU]___
_________GT_____________________CG___CT
12._JA 9 /37 [POU]___
_________GG_____________________GG___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._JA 9 /37 [POU]___
CCAATTCCCCAATTGGTTTTCCCCAAGG
2._JA 9 /37 [POU]___
CCAGTTCCCCATCTAGCTTTCCCTAGGT
3._JA 9 /37 [POU]___
CCAATTCCCCAATTGGTTTTCCCCAAGG
4._JA 9 /37 [POU]___
CCAATTCCCCAATTGGTTTTCCCCAAGG
5._JA 9 /37 [POU]___
CCAATTCCCCAATTGGTTTTCCCCAAGG
6._JA 9 /37 [POU]___
GGAAAACCGGAAAAGG___AA___GGAACC
7._JA 9 /37 [POU]___
______TTCC___AATTGG_________CCAA___
8._JA 9 /37 [POU]___
______TTCC___AATTGG_________CCAA___
9._JA 9 /37 [POU]___
______TTCC___AATTGG_________CCAA___
10._JA 9 /37 [POU]___
______TTCC___AATTGG_________CCAA___
11._JA 9 /37 [POU]___
______TTCC___ATCTAG_________CTAG___
12._JA 9 /37 [POU]___
______TTGG___AATTAG_________CCAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._JA 9 /37 [POU]___
AACCAATTTTTTTTCCGGCCTTCCTT___
2._JA 9 /37 [POU]___
AACCAGTTCTTTCCCTGTACGTCC___AA
3._JA 9 /37 [POU]___
AACCAATTTTTTTTCCGGCCTTCCTT___
4._JA 9 /37 [POU]___
AACCAATTTTTTTTCCGGCCTTCCTT___
5._JA 9 /37 [POU]___
AACCAATTTTTTTTCCGGCCTTCCTT___
6._JA 9 /37 [POU]___
AAGGAA______AAAA___CC___AAGGAA___
7._JA 9 /37 [POU]___
AA_________TT______CC______TTCC______
8._JA 9 /37 [POU]___
AA_________TT______CC______TTCC______
9._JA 9 /37 [POU]___
AA_________TT______CC______TTCC______
10._JA 9 /37 [POU]___
AA_________TT______CC______TTCC______
11._JA 9 /37 [POU]___
AA_________CT______CT______GTCC___AA
12._JA 9 /37 [POU]___
AA_________TT______CC______GTCC___AA
 85 86 87 88 89 90 91 92 93 94 95 96   
1._JA 9 /37 [POU]___
GGTTTTCCGGAATTCCAAAAAAAAX_XX_X
2._JA 9 /37 [POU]___
AGCTCTCTGGGGCTACAAACAGAAX_XX_X
3._JA 9 /37 [POU]___
GGTTTTCCGGAATTCCAAAAAAAAX_XX_X
4._JA 9 /37 [POU]___
GGTTTTCCGGAATTCCAAAAAAAAX_XX_X
5._JA 9 /37 [POU]___
GGTTTTCCGGAATTCCAAAAAAAAX_XX_X
6._JA 9 /37 [POU]___
GGAAAAGGCCAAAACC___AAAAAAX_XX_X
7._JA 9 /37 [POU]___
___TT___CCGGAATT_______________X_XX_X
8._JA 9 /37 [POU]___
___TT___CCGGAATT_______________X_XX_X
9._JA 9 /37 [POU]___
___TT___CCGGAATT_______________X_XX_X
10._JA 9 /37 [POU]___
___TT___CCGGAATT_______________X_XX_X
11._JA 9 /37 [POU]___
___CT___CTGGGGCT_______________X_XX_X
12._JA 9 /37 [POU]___
___TT___CCGGAATT_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._JA_9_/37_[POU] GC-08-071-1-93

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._JA_9_/37_[POU] GC-08-071-1-93

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._JA_9_/37_[POU] GC-08-071-1-93

Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._JA_9_/37_[POU] GC-08-071-1-93

Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._JA_9_/37_[POU] GC-08-071-1-93

Location: Tree: 5
Notes: 5
 Mars, 2018

6._JA_9_/37_[POU] GC-08-71-1-93

Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._JA_9_/37_[POU]

Location: 8193 5
 Dapeng Zhang, 2016

8._JA_9_/37_[POU]

Location: 8193 1 > FP
 Dapeng Zhang, 2016

9._JA_9_/37_[POU]

Location: 8193 3 > FP
 Dapeng Zhang, 2016

10._JA_9_/37_[POU]

Location: 8193 4 > FP
 Dapeng Zhang, 2016

11._JA_9_/37_[POU]

Location: 8193 2 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._JA_9_/37_[POU]

Location: 5B E394 T8
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133